TCONS_00007677-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007677-protein
Unique NameTCONS_00007677-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length118

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007677-protein ID=TCONS_00007677-protein|Name=TCONS_00007677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEESDGAHDTENEGASSSSDKKKRLFTKEIRCMLYGFGDEQVPYTETVEM
LDDLLIQFITDTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTM
NEELKKARKAFDAESYGE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004350XLOC_004350Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007677TCONS_00007677Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription from RNA polymerase II promoter
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availableGENE3D1.10.20.10coord: 26..68
e-value: 2.2E-18
score: 65.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 25..113
e-value: 7.3E-33
score: 112.4
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 23..112
e-value: 4.37267E-41
score: 132.269
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 25..68

Blast
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BLAST of TCONS_00007677-protein vs. Swiss-Prot (Human)
Match: TAF13 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.034e-51
Identity = 69/97 (71.13%), Postives = 91/97 (93.81%), Query Frame = 0 
Query:   21 KKKRLFTKEIRCMLYGFGDEQVPYTETVEMLDDLLIQFITDTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTMNEELKKARKAFDAESYG 117
            K+KRLF+KE+RCM+YGFGD+Q PYTE+V++L+DL+I+FIT+ T KAM++G++GRV VEDIV+LIRKDP+K+ARVK+LLTMNEELK+ARKAFD  +YG
Sbjct:   27 KRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYG 123
The following BLAST results are available for this feature:
BLAST of TCONS_00007677-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF137.034e-5171.13Transcription initiation factor TFIID subunit 13 O... [more]
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