TCONS_00007632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007632
Unique NameTCONS_00007632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007632 ID=TCONS_00007632|Name=TCONS_00007632|organism=Clytia hemisphaerica|type=transcript|length=837bp
ATCGCTTTACTAATCAATAAAGTCAAAGTGATAGTAAGCTGATGTTGTTG
ATTTGTGTACAGTTCTCGATATAAGCAGTTCGTGATAGTTTATTACAACT
TTACTTCAAAATGGATCAAGACGTACGAAACAACATGCGAGAACACAACG
CTCATGGCGAACGGAGGGTTGATGAACACAATGCACATGGTGTGCGAGAA
GATGATAATCATCAAGCTGTTGCTGAACTACAAGTGGAAGAAAATGGTAG
TGCGCATGTGCAGAATGAAGTTCGAAAAGTTTCGAAGAGAAGTGATTTCA
GTATAATGTCAACGGAAGATGTTATATCAATTGGTTCTCAAATGCTTCTC
GAAACAGAATTTTGTTCCAATTATGAAAGTTGGTATAATGTTCTTCGACA
AAGAATCGGTGTTAAGGAGACTGTTTGCTCGAAGAACTGTTTAGTCACTA
AACAACGTGACAGTATTTGGGTGTTTTGTATCGACATTGCTGATTTGGTC
AACAATCCAAGAGAATGGAGTCACGAAAAAGTGAGGTTTGCGAAATTGCT
CCATCCAAAGAATAACATGGAAATAAAAGACATACATTATAATGAGGGTA
CTGGTAAATGGTGGACTACTTCTCAGCGTCTACGTGATTACTATGTAGAT
GATTGCGAGTTCGTTTGTTTCGTAATGAAAAAACAATAACTGTGAATGTT
TGTAGATGGTTGAATTTTACGTTGGCGTCATTGAGAAACTTGTTAACGAA
ATCGATATCTTCTTGATTTCCATTTTCATGGTCCACATAGACAGATGTTA
GTGTCCACCGTTGGCAGATTAGTATTCTCTGTAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000078:616779..617615-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007632 ID=TCONS_00007632|Name=TCONS_00007632|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0000078:616779..617615- (Clytia hemisphaerica)
ATCGCTTTACTAATCAATAAAGTCAAAGTGATAGTAAGCTGATGTTGTTG
ATTTGTGTACAGTTCTCGATATAAGCAGTTCGTGATAGTTTATTACAACT
TTACTTCAAAATGGATCAAGACGTACGAAACAACATGCGAGAACACAACG
CTCATGGCGAACGGAGGGTTGATGAACACAATGCACATGGTGTGCGAGAA
GATGATAATCATCAAGCTGTTGCTGAACTACAAGTGGAAGAAAATGGTAG
TGCGCATGTGCAGAATGAAGTTCGAAAAGTTTCGAAGAGAAGTGATTTCA
GTATAATGTCAACGGAAGATGTTATATCAATTGGTTCTCAAATGCTTCTC
GAAACAGAATTTTGTTCCAATTATGAAAGTTGGTATAATGTTCTTCGACA
AAGAATCGGTGTTAAGGAGACTGTTTGCTCGAAGAACTGTTTAGTCACTA
AACAACGTGACAGTATTTGGGTGTTTTGTATCGACATTGCTGATTTGGTC
AACAATCCAAGAGAATGGAGTCACGAAAAAGTGAGGTTTGCGAAATTGCT
CCATCCAAAGAATAACATGGAAATAAAAGACATACATTATAATGAGGGTA
CTGGTAAATGGTGGACTACTTCTCAGCGTCTACGTGATTACTATGTAGAT
GATTGCGAGTTCGTTTGTTTCGTAATGAAAAAACAATAACTGTGAATGTT
TGTAGATGGTTGAATTTTACGTTGGCGTCATTGAGAAACTTGTTAACGAA
ATCGATATCTTCTTGATTTCCATTTTCATGGTCCACATAGACAGATGTTA
GTGTCCACCGTTGGCAGATTAGTATTCTCTGTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004307XLOC_004307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007632-exon-sc0000078-1575043694:616779..617615TCONS_00007632-exon-sc0000078-1575043694:616779..617615Clytia hemisphaericaexon
TCONS_00007632-exon-sc0000078-1510915933:616779..617615TCONS_00007632-exon-sc0000078-1510915933:616779..617615Clytia hemisphaericaexon
TCONS_00007632-exon-sc0000078-1491911889:616779..617615TCONS_00007632-exon-sc0000078-1491911889:616779..617615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:616779..617615 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203456	0.169225	0.199046	0.42619	0	0.180605	0.290524	0.584583	0.380846	0.530707	0.482289	0.13842	6.93626	5.32515	0.410485	0.57786	0.594012	1.23479	5.44858	4.4928	1.13343	1.52054	0.279591	0.500802	2.57081	2.28596	0.0774634	0	0.125406	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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