TCONS_00007598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007598
Unique NameTCONS_00007598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007598 ID=TCONS_00007598|Name=TCONS_00007598|organism=Clytia hemisphaerica|type=transcript|length=825bp
TTTAGGACCAAGTCACGCGTTATAGCTTTTGTCGTAGGAGttctgattta
ttttattttctgttttttagCAATAAGTCTTGATTTAAACCTTATGTTCT
AATTAATATGAATGATTTCCAGATTTATTTCATATACACATAGAGCAAAA
GGAAAATATTGTTATCATAATGTGGAGATTGTGTTGCAGTGTTTTGTTGG
TCATTTGTTTGGTGAGCCACGTTCAAGCAAAACCAAGCAAGGGCCAATGG
ATCAAAACAATGCAATCATTGAATGAAAATCATAAACCTGCTTTCATGGA
ATATAAAATAGTATATCGACCGCTCGGATGCGTTAAAACAAAAGCTTGCA
AAGCTGTCAGATTGGAGATGTTTTACAAGTTGAACAAGAAATCTCAAGGA
ATCAGTCTTGGCTACAAAACCATTTATGGACCAACTAGCCTTAAAAGATA
ATGAGCTTTTATTCTGCCaagtttatttgtttgttttcaaatttgtaaat
agctaacaaaattttcttgattttttgaaatgtatATAAGGTACAGTAAT
TGATTTAATAGCAAATACGATGTCGTAGTTCTCCAAAACTAAAAATGCCC
CTCTGCTATCTCTTACTATCCTGAATTTAACCCTACACccccaaaaaaaa
gaaatcacacaCAAGACGTTTAAAAACCATTTAATAAATATTCTCTTGCT
TTCCGATATAAATATTTACACAAAATTCTAAATCTAaattttcttataga
aaaattatGCTAAAATATGTTCAAGAATTCCTTGACGTACTAAATGTTCA
CATTGCGTTGTTGGGaggaaatgct
Run BLAST on NCBI

transcript from alignment at sc0000078:526083..530259+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007598 ID=TCONS_00007598|Name=TCONS_00007598|organism=Clytia hemisphaerica|type=transcript|length=4177bp|location=Sequence derived from alignment at sc0000078:526083..530259+ (Clytia hemisphaerica)
TTTAGGACCAAGTCACGCGTTATAGCTTTTGTCGTAGGAGttctgattta
ttttattttctgttttttagCAATAAGTCTTGATTTAAACCTTATGTTCT
AATTAATATGAATGATTTCCAGATTTATTTCATATACACATAGAGCAAAA
GGAAAATATTGTTATCATAATGTGGAGATTGTGTTGCAGTGTTTTGTTGG
TCATTTGTTTGGTGAGCCACGTTCAAGCAAAACCAAGGTATGAAATTTAT
CTTCaattatgttttaaatttccgaAGTTTGGTGCGCGGTAGAAATGAGG
TAGAAAATGCATATACAAAtacaaatccgaccatttttgaagactccagg
CTACCCCAAAGTTTTGAGGTGACAGACTGACAGACTGACTGACTGATATA
CAGACagaccagggatatgttatagcagagctggataacgcacatttaaa
aaagccttgttctatctctgtccctgacattaaaatttgatatgaaattt
aactttttttaattACAAACATGTGAAATTTGGATTTCCTCTTAGCCAAT
GATTCTGCTGCTGCAtttatcgttcacgattaaaaacttttaattatcaa
gagggtctgtaaaacattggtgaatgacaatttaaaaaaatgaaaaacat
tgttttcattagtaataTATAAGATGTTTCTTCTCGAAGAatataaatag
tactttttcatttgaaataccgcgctacacctcGGGGTgtctcactttct
aactgatattttcagatagcaagtcggtatgtctaattatggaaaaaatt
tcaagtcaattgaaacaatatttgtcaaaatatttacatccgaaattttt
aaagagaaatcatgaaagcttctcaaattcataacacacgctgataaaaa
tagatttcatttacaaggaagcttttggggtattttCTCCTACacatatt
attttgatgaaaatcggGAGCATcgtagcaaaatatgtgcaaacgtactg
catgaatactttgtctgcttcatttttcttataaaaacagaacactcaag
gggacagagatggatttctattatgaacagtttacaatagaaaagacaaa
gaagcaatccgctaaggaattctcgtcctacatccagctccgctataaca
tatccctggacAGACAGAgcttctcagattctagctcaactgaaattGAG
AAAAGGGGGACTAGCCAAAAATTAAAAGATGAGATTTTCCCATGTATAAA
AAAGGGGGACCATTTTGGCTAGCTGCTTCTTCCCAGGGCAGTTACGAGAG
AAATGACAAATAAATATTGATATCTTCTTAATtaagaatttgatttttta
tttcatcatgatggatattcttaactttgcggggaaaatcatcctaaaat
attcttaggaAAGGACCAAAACTAAGCCTaagcatttttgtgaaaatctt
tatggcaaattaccttaagggaacttattttggcaggaactaattagttc
ctgccaaaattaaattttttgtttccttccTAAATAACCtctaaaattca
tcaaaattgctcaaaataaggcaaaatagaacagatttacgctgttagga
tatttgctgcccgccaaaattagcgccaaaaaaagttcccttaaggtaca
agGAAACGGCTCTGAAAATGACATTCTTTAGCTTAGGTTCAGTTTCCAAA
AGTCCATGATTGTGGTATTCTTagtacatttttaatttttatggtCAGTA
GAAGAATCGCGAAAGCGTTATCCTAAAATGAGACCGTCTCTCGAATTTGT
TTTAGCAAGGGCCAATGGATCAAAACAATGCAATCATTGAATGAAAATCA
TAAACCTGCTTTCATGGAATATAAAATAGTATATCGACCGCTCGGATGCG
TTAAAACAAAAGCTTGCAAAGCTGTCAGGTAAGAATTAGTCTCCGTGTTA
AAACAGCTACCAAGTCAAGCTAGAAGAGAAAAGAGCTAGTCATATCATTA
GCTTCATTATCTAAGTTGAGTGAAACTGTGCCAAGACTGACATAttttcg
ggtacctaatagccgtcccccccgctaattaatttttcgaaaattttcca
cccaggacatttttattccaactcgctccctgcttattaagttttgagat
tttttccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGATATTTGCAGATTGGAGATGTTTTACAAGTTGAACAAGAAATCTCAAG
GAATCAGTCTTGGCTACAAAACCATTTATGGACCAACTAGCCTTAAAAGA
TAATGAGCTTTTATTCTGCCaagtttatttgtttgttttcaaatttgtaa
atagctaacaaaattttcttgattttttgaaatgtatATAAGGTACAGTA
ATTGATTTAATAGCAAATACGATGTCGTAGTTCTCCAAAACTAAAAATGC
CCCTCTGCTATCTCTTACTATCCTGAATTTAACCCTACACccccaaaaaa
aagaaatcacacaCAAGACGTTTAAAAACCATTTAATAAATATTCTCTTG
CTTTCCGATATAAATATTTACACAAAATTCTAAATCTAaattttcttata
gaaaaattatGCTAAAATATGTTCAAGAATTCCTTGACGTACTAAATGTT
CACATTGCGTTGTTGGGaggaaatgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004288XLOC_004288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007598-exon-sc0000078-1491911889:526083..526319TCONS_00007598-exon-sc0000078-1491911889:526083..526319Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1510915933:526083..526319TCONS_00007598-exon-sc0000078-1510915933:526083..526319Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1575043694:526083..526319TCONS_00007598-exon-sc0000078-1575043694:526083..526319Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1491911889:527888..528010TCONS_00007598-exon-sc0000078-1491911889:527888..528010Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1510915933:527888..528010TCONS_00007598-exon-sc0000078-1510915933:527888..528010Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1575043694:527888..528010TCONS_00007598-exon-sc0000078-1575043694:527888..528010Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1491911889:529795..530259TCONS_00007598-exon-sc0000078-1491911889:529795..530259Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1510915933:529795..530259TCONS_00007598-exon-sc0000078-1510915933:529795..530259Clytia hemisphaericaexon
TCONS_00007598-exon-sc0000078-1575043694:529795..530259TCONS_00007598-exon-sc0000078-1575043694:529795..530259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:526083..530259 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.71315	7.84827	2.94505	2.55672	0	0.122749	0.0740458	0.0693208	0	0.0601161	0	0	12.43	9.10936	2.7471	6.07161	0	0.399516	33.414	23.4297	0.278424	0.330182	3.70826	3.24643	0	0	0.317818	0.168563	0.84025	1.04481
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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