TCONS_00007564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007564
Unique NameTCONS_00007564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007564 ID=TCONS_00007564|Name=TCONS_00007564|organism=Clytia hemisphaerica|type=transcript|length=1135bp
CAACTTGTGAAAATGGCCATTGTTTGTCTCCGTACAAGTTTGTAGTCGAG
GTTGGAAAGGATATACATGTGGTGAGTGTGTTGTGGGGCCTGGTTGCCTT
CATGGTACATGTGACGAGCCTTATGAATGCAATTGCTCTGAGGGATGGTC
AGGTGGGACTTGTGATACATGCGTCAAAGCACCTGGCTGTGTTCATGGGG
CATGTAACCTACCAGATGAGTGCAATTGCGACATTGGTTGGACAGGAGAA
AACTGTGATCAGAAAGTGACCTGCGATATGCAGCCATGTGAGAATGGTGC
ATTATGCCTTCAACACAGTGATAATTACACTTGCCAATGCCCTAAAGGAT
TAGCTGGAATCCATTGTGAAATCGACATATTAGATCATTGCGATCCTTTT
CCATGCACTAAATCGTCAGCCATTTGCCTTGACAAGCCGTTTGGTTATGA
ATGCAGCTGCCCTCTTGGATGGGGAGGTGTCAATTGCACTGAAAGGGATA
TGTGCAGCTTGGATCCTTGTGTAAACTCTCATGAATGTAACAACATTGGA
AACGATTATTACTGCTCTTGCAAACATGGATGGTCTGGAAAGAATTGCAC
TCAAAaCTCCAATGATTGCCATGGTCAATGTCAAAACAATGCTACTTGTG
TTGACAAAGTCAGTGAATACTTGTGTGAATGTCAACCaggattttctggc
aaaaattgTGAGATCAATGTGAATGAGTGTGCTGTCTCACCATGTCAAAA
CCAGGGTGTTTGTAAAGACCAGATTAATGGGTACAAGTGCATCTGCCAAA
CTGGTTTCTCTGGGAAGAACTGCTCTGTTGTGTTTGATCGTTGCAGTGAA
ATTCCCTGCAAGAATGATGGATTGTGTACTCGTTTTCATAATGATTATAA
ATGCAAATGTGCGAAAGGCTGGACTGGTAGAAATTGTGATAATCCAATTC
ATACTGTTGGTAGACTCCAAGAATGTAAAAATGACCCTTGTAGACATGGC
TCTACATGTTACATGCAAGCAGGGAAAGAGAAATGCCATTGCACTGCAGG
ATACACTGGGCGATATTGTCAAATTGATATAGATGATTGTGTGACACACA
AGTGCCAGAATTCTGCTCAATGTATCGACCGAGTT
Run BLAST on NCBI

transcript from alignment at sc0000078:189555..192340+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007564 ID=TCONS_00007564|Name=TCONS_00007564|organism=Clytia hemisphaerica|type=transcript|length=2786bp|location=Sequence derived from alignment at sc0000078:189555..192340+ (Clytia hemisphaerica)
CAACTTGTGAAAATGGCCATTGTTTGTCTCCGTACAAGTGTAGGTTAGTT
GATTCAtgttttacaaaaattgaaaatttaaggATCAAGCTCGTACCAAT
TTCTCCTCATAATTAGAGTGACAGGTTCTGAATATTTATTGATGtcaaat
ttatttcttttagTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTGAG
TGTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTATGA
ATGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGTCA
AAGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCAAT
TGCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGTATGTCATTAGT
TATCAATATTCACTTTGAGGGTTTTATATAAACTTGATACCAAGGAGATG
ATGTCTAATATGTTGCTTTTTTAAGATTCCACTGTTGGGGGTGTTTCTGG
TTTTTATTCATGTACATGTCAATATAACAGTTACTCATTCTATTGGAATt
taaaattatcagaaattaGCAAAATccattttaaattatttatgTACATT
CATTTTAATTTAAACTAGCTATCAAGATGTTTACTAGCGGAAGTTTTTTA
aactaaatgaaaaataatttgcatTGAGTTTCATTAGATTTccaattcaa
aaaattgaaattgttttgcttgtaaaattcaTTCTTCAATTATTCATCAA
GTCTGTGGTTCACTGAGAGACATTCTTCTGTGTGACTGCTTAAGTTTCCC
TGACACTACCATGCGTACCaaaaaagtttatttaaaaTTAGATGTTCCTT
TCATTGGCATAACAACACTGATGTAATTAGTCTATTTCCATCCACAGATC
CACACAAGATATGATTTTTATAATCCTCGTTTCTTGTTTACATCACAATT
AAATTGCCAAATAGCACCACTACACTTTATCCCAGCTTTACGTCTATGTT
TTCCTAttccaaatattgacaaaatcacATAAAGTTAAATCTCAATTCTT
GatgcttttctttattttgcagAAGTGACCTGCGATATGCAGCCATGTGA
GAATGGTGCATTATGCCTTCAACACAGTGATAATTACACTTGCCAATGCC
CTAAAGGATTAGCTGGAATCCATTGTGAAATCGGTAAGCTATCTGGTTTT
ATAAGGACTCTTATAACTAGTCCTTGAACCAATCAATCTGCACATAAGTG
ACAAATATCtttgaaaggttttgtttttaagtaagagtgatatcgtttgc
ttgctcatcaattttaattcaccagctttttcacattggattgacacgga
tgtggagcaagattggcccaaaagaggaaaagaaaaacaactttttgctt
atatcagcatgatataacaataggaagacactgtcctggtatgaaatatg
tgtctgacatgaaacgggaacactcatgtaaaaatgaaacctttaatCAC
AAGTCAAAACCatctaaaaatattatatttatattttttccttCTCTTGT
TTTAGACATATTAGATCATTGCGATCCTTTTCCATGCACTAAATCGTCAG
CCATTTGCCTTGACAAGCCGTTTGGTTATGAATGCAGCTGCCCTCTTGGA
TGGGGAGGTGTCAATTGCACTGGTAggttatttcaaatttatttatatcC
GTTTGTCTACCTAAGCTAACCAGTTTCACCAACTGATGGGTTATTTCTGG
TAACTTTAAGGTCTCAACTTTAAAAGATCACTCAACTCTGTAAAGAAATT
TCTGAGACTCTTGTCACTTTTGTGTGTCTTCTTCTGAGCAGAACTTGCAA
ATTAAATGAAGctgttttatttaaaaagaaatgcTACACTTTTGGGTAGT
CTTCATATTTATCAGGAAATGAATGATTTCTTTCTCGTGCTATAGAAAGG
GATATGTGCAGCTTGGATCCTTGTGTAAACTCTCATGAATGTAACAACAT
TGGAAACGATTATTACTGCTCTTGCAAACATGGATGGTCTGGAAAGAATT
GCACTCAAAGTAAGTACATGACTTCTTGCTTGATCTTGATTCATATTTTA
GAAATCAAGTCATTTTATCGTCATTACCATCATTCATTGAAATTAAGAAT
TATAATAAACAATTCACATAATTCACCTCactatattttgcaaatatgCG
TCGATTGAAATTTTCCTGGCAAATATAATTTATGacaaatttgatttgaa
ttttagaCTCCAATGATTGCCATGGTCAATGTCAAAACAATGCTACTTGT
GTTGACAAAGTCAGTGAATACTTGTGTGAATGTCAACCaggattttctgg
caaaaattgTGAGATCAATGTGAATGAGTGTGCTGTCTCACCATGTCAAA
ACCAGGGTGTTTGTAAAGACCAGATTAATGGGTACAAGTGCATCTGCCAA
ACTGGTTTCTCTGGGAAGAACTGCTCTGTTGTGTTTGATCGTTGCAGTGA
AATTCCCTGCAAGAATGATGGATTGTGTACTCGTTTTCATAATGATTATA
AATGCAAATGTGCGAAAGGCTGGACTGGTAGAAATTGTGATAATCCAATT
CATACTGTTGGTAGACTCCAAGAATGTAAAAATGACCCTTGTAGACATGG
CTCTACATGTTACATGCAAGCAGGGAAAGAGAAATGCCATTGCACTGCAG
GATACACTGGGCGATATTGTCAAATTGATATAGATGATTGTGTGACACAC
AAGTGCCAGAATTCTGCTCAATGTATCGACCGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004275XLOC_004275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007564-exon-sc0000078-1491911889:189555..189593TCONS_00007564-exon-sc0000078-1491911889:189555..189593Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:189555..189593TCONS_00007564-exon-sc0000078-1510915933:189555..189593Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:189555..189593TCONS_00007564-exon-sc0000078-1575043694:189555..189593Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1491911889:189718..189941TCONS_00007564-exon-sc0000078-1491911889:189718..189941Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:189718..189941TCONS_00007564-exon-sc0000078-1510915933:189718..189941Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:189718..189941TCONS_00007564-exon-sc0000078-1575043694:189718..189941Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1491911889:190627..190737TCONS_00007564-exon-sc0000078-1491911889:190627..190737Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:190627..190737TCONS_00007564-exon-sc0000078-1510915933:190627..190737Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:190627..190737TCONS_00007564-exon-sc0000078-1575043694:190627..190737Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1491911889:191110..191226TCONS_00007564-exon-sc0000078-1491911889:191110..191226Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:191110..191226TCONS_00007564-exon-sc0000078-1510915933:191110..191226Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:191110..191226TCONS_00007564-exon-sc0000078-1575043694:191110..191226Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1491911889:191500..191613TCONS_00007564-exon-sc0000078-1491911889:191500..191613Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:191500..191613TCONS_00007564-exon-sc0000078-1510915933:191500..191613Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:191500..191613TCONS_00007564-exon-sc0000078-1575043694:191500..191613Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1491911889:191811..192340TCONS_00007564-exon-sc0000078-1491911889:191811..192340Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1510915933:191811..192340TCONS_00007564-exon-sc0000078-1510915933:191811..192340Clytia hemisphaericaexon
TCONS_00007564-exon-sc0000078-1575043694:191811..192340TCONS_00007564-exon-sc0000078-1575043694:191811..192340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:189555..192340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114131	0	0.121933	0	0.000637407	0.174123	1.95305	0.28542	4.86946e-06	1.07474	2.86393	1.59835	0.000232668	1.85942	1.06835	3.287	1.9296	2.40276	0	5.10663e-06	1.56154	0.624926	0	0.749801	0.0121345	5.47944	0.297292	0	0	0
Blast
[Close]
BLAST of TCONS_00007564 vs. Swiss-Prot (Human)
Match: JAG2 (Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 5.037e-72
Identity = 158/435 (36.32%), Postives = 197/435 (45.29%), Query Frame = 2 
Query:   35 QVCSRGWKGYTCGECVVGPGC--LHGTCDEPYECNCSEGWSGGTCDTCVKAPGCVHGACNLPDECNCDIGWTGENCDQKV-----------------------------------------TCDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNC-TERDMCSLDPCVNSHECNNIGNDYYCSCKHGWSGKNCTQNSNDCHGQCQNNATCVDKVSEYLCECQPGFSGKNCEINVNECAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNCDNPIHTVGRLQECKNDPCR------------------------HGSTCYMQAGKEKCHCTAGYTGRYCQIDIDDCVTHKCQNSAQCIDRV 1135
            + C  GW G  C E V   GC  LHG C  P EC CS GW G  CD CV  PGCVHG+C  P +CNC+  W G  CD+ +                                          C   PC NG  C +    + C CP G +G  C +DI D C   PC  +   C+D+  G+EC CP  W G  C  + + C   PC+N+  C N+   YYC C  GW G NC  N NDC GQCQ+  TC D V+ Y C C  GF G++CE+  +ECA SPC + G+C+D  +G+ C C  GFSG  C V  D C   PC+N   C     DY C C   + G+NC  P       + C    CR                        HG       G   C C +G+TG YC  +IDDC+   C+N   CID V
Sbjct:  229 KACMDGWMGKECKEAVCKQGCNLLHGGCTVPGECRCSYGWQGRFCDECVPYPGCVHGSCVEPWQCNCETNWGGLLCDKDLNYCGSHHPCTNGGTCINAEPDQYRCTCPDGYSGRNCEKAEHACTSNPCANGGSCHEVPSGFECHCPSGWSGPTCALDI-DECASNPCA-AGGTCVDQVDGFECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQCQHGGTCKDLVNGYQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADGFHCHCPQGFSGPLCEVDVDLCEPSPCRNGARCYNLEGDYYCACPDDFGGKNCSVP------REPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEV 655

HSP 2 Score: 155.606 bits (392), Expect = 9.629e-41
Identity = 120/404 (29.70%), Postives = 178/404 (44.06%), Query Frame = 2 
Query:  122 YECNCSEGWSGGTCDTCVK--APGCVHGAC--NLPD--ECNCDIGWTGENCD-QKVTCDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNCT-ERDMCSLDPCVNSHEC------------------------NNIGNDYYCSCKHGWSGKNCTQNSNDCHGQ-CQNNATCVDKVSEYLCECQPGFSGKNCEINVNECAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNC---------DNPIHTVG------------------------RLQECKNDPCRHGSTCYMQAGKEKCHCTAGYTGRYCQIDIDDCVTHKCQNSAQCIDRV 1135
            Y C+C  GW G  C   V      C HG    +L +  +C C  G+ G +C+ ++  C   PC +G LC   +D + C CP+G +G  CE+D+ D C+P PC ++ A C +    Y C+CP  +GG NC+  R+ C    C     C                        +  G ++ C C  G++G  C +N +DC GQ C+N  TC+D+V  + C C  G+ G+ C+ N N+C   PC ++G C D +N + C C  G+ GK C     +C    C N G C    + ++C C  GW G  C          NP    G                           +C   PC +G  C       +C C  G+ G  C+I+ID+C +  C   A C+D +
Sbjct:  445 YYCDCIPGWKGINCHINVNDCRGQCQHGGTCKDLVNGYQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADGFHCHCPQGFSGPLCEVDV-DLCEPSPC-RNGARCYNLEGDYYCACPDDFGGKNCSVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRCYDLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDEI 846

HSP 3 Score: 149.828 bits (377), Expect = 9.220e-39
Identity = 106/323 (32.82%), Postives = 149/323 (46.13%), Query Frame = 2 
Query:  122 YECNCSEGWSGGTCDTCVKAPGCVHGACNLPDECNCDIGWTGENCDQKVTCDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNC-TERDMCSLDPCVNSHECNNIGNDYYCSCKHGWSGKNCTQNSNDCHG-QCQNNATCVDKVSEYLCECQPGFSGKNCEINVNE-CAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNCDNPIHTVGRLQECKNDPCRHGSTCYMQAGKEKCHCTAGYTGRYCQIDI 1081
            Y C C + + G  C   V    C  GAC + D C  D G           C      +G    Q   N++C C  G  G +C  +I D C   PC ++   C+D+   + C CP GW G  C T  + C  DPC +   C ++ ND+YC+C  GW GK C      C    C N  TC D    + C C PG+ G  C +  N  C  +PC N G C      + CIC+ G+ G+ C+   + C+ +PC N G+C    N ++C+CA G+ G +C   I       EC++ PC +G+TC  +    +C C  G  G  CQ  I
Sbjct:  558 YYCACPDDFGGKNCS--VPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCG----PHGRCVSQPGGNFSCICDSGFTGTYCHENI-DDCLGQPC-RNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRCYDLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINI------DECQSSPCAYGATCVDEINGYRCSCPPGRAGPRCQEVI 866
The following BLAST results are available for this feature:
BLAST of TCONS_00007564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JAG25.037e-7236.32Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3[more]
back to top