TCONS_00007560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007560
Unique NameTCONS_00007560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007560 ID=TCONS_00007560|Name=TCONS_00007560|organism=Clytia hemisphaerica|type=transcript|length=1150bp
AATGTGTGATCCAACTTGTGAAAATGGCCATTGTTTGTCTCCGTACAAGT
GTAGTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTGAGTGTGTTGTG
GGGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTATGAATGCAATTG
CTCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGTCAAAGCACCTG
GCTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCAATTGCGACATT
GGTTGGACAGGAGAAAACTGTGATCAGAAAGTGACCTGCGATATGCAGCC
ATGTGAGAATGGTGCATTATGCCTTCAACACAGTGATAATTACACTTGCC
AATGCCCTAAAGGATTAGCTGGAATCCATTGTGAAATCGACATATTAGAT
CATTGCGATCCTTTTCCATGCACTAAATCGTCAGCCATTTGCCTTGACAA
GCCGTTTGGTTATGAATGCAGCTGCCCTCTTGGATGGGGAGGTGTCAATT
GCACTGAAAGGGATATGTGCAGCTTGGATCCTTGTGTAAACTCTCATGAA
TGTAACAACATTGGAAACGATTATTACTGCTCTTGCAAACATGGATGGTC
TGGAAAGAATTGCACTCAAAaCTCCAATGATTGCCATGGTCAATGTCAAA
ACAATGCTACTTGTGTTGACAAAGTCAGTGAATACTTGTGTGAATGTCAA
CCaggattttctggcaaaaattgTGAGATCAATGTGAATGAGTGTGCTGT
CTCACCATGTCAAAACCAGGGTGTTTGTAAAGACCAGATTAATGGGTACA
AGTGCATCTGCCAAACTGGTTTCTCTGGGAAGAACTGCTCTGTTGTGTTT
GATCGTTGCAGTGAAATTCCCTGCAAGAATGATGGATTGTGTACTCGTTT
TCATAATGATTATAAATGCAAATGTGCGAAAGGCTGGACTGGTAGAAATT
GTGATAATCCAATTCATACTGTTGGTAGACTCCAAGAATGTAAAAATGAC
CCTTGTAGACATGGCTCTACATGTTACATGCAAGCAGGGAAAGAGAAATG
CCATTGCACTGCAGGATACACTGGGCGATATTGTCAAATTGATATAGATG
ATTGTGTGACACACAAGTGCCAGAATTCTGCTCAATGTATCGACCGAGTT
Run BLAST on NCBI

transcript from alignment at sc0000078:189544..192340+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007560 ID=TCONS_00007560|Name=TCONS_00007560|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at sc0000078:189544..192340+ (Clytia hemisphaerica)
AATGTGTGATCCAACTTGTGAAAATGGCCATTGTTTGTCTCCGTACAAGT
GTAGGTTAGTTGATTCAtgttttacaaaaattgaaaatttaaggATCAAG
CTCGTACCAATTTCTCCTCATAATTAGAGTGACAGGTTCTGAATATTTAT
TGATGtcaaatttatttcttttagTTGTAGTCGAGGTTGGAAAGGATATA
CATGTGGTGAGTGTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGAC
GAGCCTTATGAATGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGA
TACATGCGTCAAAGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAG
ATGAGTGCAATTGCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGT
ATGTCATTAGTTATCAATATTCACTTTGAGGGTTTTATATAAACTTGATA
CCAAGGAGATGATGTCTAATATGTTGCTTTTTTAAGATTCCACTGTTGGG
GGTGTTTCTGGTTTTTATTCATGTACATGTCAATATAACAGTTACTCATT
CTATTGGAATttaaaattatcagaaattaGCAAAATccattttaaattat
ttatgTACATTCATTTTAATTTAAACTAGCTATCAAGATGTTTACTAGCG
GAAGTTTTTTAaactaaatgaaaaataatttgcatTGAGTTTCATTAGAT
TTccaattcaaaaaattgaaattgttttgcttgtaaaattcaTTCTTCAA
TTATTCATCAAGTCTGTGGTTCACTGAGAGACATTCTTCTGTGTGACTGC
TTAAGTTTCCCTGACACTACCATGCGTACCaaaaaagtttatttaaaaTT
AGATGTTCCTTTCATTGGCATAACAACACTGATGTAATTAGTCTATTTCC
ATCCACAGATCCACACAAGATATGATTTTTATAATCCTCGTTTCTTGTTT
ACATCACAATTAAATTGCCAAATAGCACCACTACACTTTATCCCAGCTTT
ACGTCTATGTTTTCCTAttccaaatattgacaaaatcacATAAAGTTAAA
TCTCAATTCTTGatgcttttctttattttgcagAAGTGACCTGCGATATG
CAGCCATGTGAGAATGGTGCATTATGCCTTCAACACAGTGATAATTACAC
TTGCCAATGCCCTAAAGGATTAGCTGGAATCCATTGTGAAATCGGTAAGC
TATCTGGTTTTATAAGGACTCTTATAACTAGTCCTTGAACCAATCAATCT
GCACATAAGTGACAAATATCtttgaaaggttttgtttttaagtaagagtg
atatcgtttgcttgctcatcaattttaattcaccagctttttcacattgg
attgacacggatgtggagcaagattggcccaaaagaggaaaagaaaaaca
actttttgcttatatcagcatgatataacaataggaagacactgtcctgg
tatgaaatatgtgtctgacatgaaacgggaacactcatgtaaaaatgaaa
cctttaatCACAAGTCAAAACCatctaaaaatattatatttatatttttt
ccttCTCTTGTTTTAGACATATTAGATCATTGCGATCCTTTTCCATGCAC
TAAATCGTCAGCCATTTGCCTTGACAAGCCGTTTGGTTATGAATGCAGCT
GCCCTCTTGGATGGGGAGGTGTCAATTGCACTGGTAggttatttcaaatt
tatttatatcCGTTTGTCTACCTAAGCTAACCAGTTTCACCAACTGATGG
GTTATTTCTGGTAACTTTAAGGTCTCAACTTTAAAAGATCACTCAACTCT
GTAAAGAAATTTCTGAGACTCTTGTCACTTTTGTGTGTCTTCTTCTGAGC
AGAACTTGCAAATTAAATGAAGctgttttatttaaaaagaaatgcTACAC
TTTTGGGTAGTCTTCATATTTATCAGGAAATGAATGATTTCTTTCTCGTG
CTATAGAAAGGGATATGTGCAGCTTGGATCCTTGTGTAAACTCTCATGAA
TGTAACAACATTGGAAACGATTATTACTGCTCTTGCAAACATGGATGGTC
TGGAAAGAATTGCACTCAAAGTAAGTACATGACTTCTTGCTTGATCTTGA
TTCATATTTTAGAAATCAAGTCATTTTATCGTCATTACCATCATTCATTG
AAATTAAGAATTATAATAAACAATTCACATAATTCACCTCactatatttt
gcaaatatgCGTCGATTGAAATTTTCCTGGCAAATATAATTTATGacaaa
tttgatttgaattttagaCTCCAATGATTGCCATGGTCAATGTCAAAACA
ATGCTACTTGTGTTGACAAAGTCAGTGAATACTTGTGTGAATGTCAACCa
ggattttctggcaaaaattgTGAGATCAATGTGAATGAGTGTGCTGTCTC
ACCATGTCAAAACCAGGGTGTTTGTAAAGACCAGATTAATGGGTACAAGT
GCATCTGCCAAACTGGTTTCTCTGGGAAGAACTGCTCTGTTGTGTTTGAT
CGTTGCAGTGAAATTCCCTGCAAGAATGATGGATTGTGTACTCGTTTTCA
TAATGATTATAAATGCAAATGTGCGAAAGGCTGGACTGGTAGAAATTGTG
ATAATCCAATTCATACTGTTGGTAGACTCCAAGAATGTAAAAATGACCCT
TGTAGACATGGCTCTACATGTTACATGCAAGCAGGGAAAGAGAAATGCCA
TTGCACTGCAGGATACACTGGGCGATATTGTCAAATTGATATAGATGATT
GTGTGACACACAAGTGCCAGAATTCTGCTCAATGTATCGACCGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004275XLOC_004275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007560-exon-sc0000078-1491911889:189544..189597TCONS_00007560-exon-sc0000078-1491911889:189544..189597Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:189544..189597TCONS_00007560-exon-sc0000078-1510915933:189544..189597Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:189544..189597TCONS_00007560-exon-sc0000078-1575043694:189544..189597Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1491911889:189718..189941TCONS_00007560-exon-sc0000078-1491911889:189718..189941Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:189718..189941TCONS_00007560-exon-sc0000078-1510915933:189718..189941Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:189718..189941TCONS_00007560-exon-sc0000078-1575043694:189718..189941Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1491911889:190627..190737TCONS_00007560-exon-sc0000078-1491911889:190627..190737Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:190627..190737TCONS_00007560-exon-sc0000078-1510915933:190627..190737Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:190627..190737TCONS_00007560-exon-sc0000078-1575043694:190627..190737Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1491911889:191110..191226TCONS_00007560-exon-sc0000078-1491911889:191110..191226Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:191110..191226TCONS_00007560-exon-sc0000078-1510915933:191110..191226Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:191110..191226TCONS_00007560-exon-sc0000078-1575043694:191110..191226Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1491911889:191500..191613TCONS_00007560-exon-sc0000078-1491911889:191500..191613Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:191500..191613TCONS_00007560-exon-sc0000078-1510915933:191500..191613Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:191500..191613TCONS_00007560-exon-sc0000078-1575043694:191500..191613Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1491911889:191811..192340TCONS_00007560-exon-sc0000078-1491911889:191811..192340Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1510915933:191811..192340TCONS_00007560-exon-sc0000078-1510915933:191811..192340Clytia hemisphaericaexon
TCONS_00007560-exon-sc0000078-1575043694:191811..192340TCONS_00007560-exon-sc0000078-1575043694:191811..192340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:189544..192340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.512844	1.4243	1.04961e-08	0.697026	0.64129	0.00112676	1.61516e-08	0.00227666	2.17708	0.0048208	0.552997	0.00440339	1.87852e-05	0.0210102	1.66579	2.13963	1.88314e-06	4.13826e-05	0.309635	0.000296305	10.6269	1.90159	0	0.215985	0.3781	0
Blast
[Close]
BLAST of TCONS_00007560 vs. Swiss-Prot (Human)
Match: JAG2 (Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 5.361e-74
Identity = 157/411 (38.20%), Postives = 204/411 (49.64%), Query Frame = 2 
Query:   23 NGHCLSPYKCSCSRGWKGYTCGECVVGPGCLHGTCDEPYECNCSEGWSGGTCDTCVKAPGCVHGACN-------LPDE--CNCDIGWTGENCDQ-KVTCDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNC-TERDMCSLDPCVNSHECNNIGNDYYCSCKHGWSGKNCTQNSNDCHGQCQNNATCVDKVSEYLCECQPGFSGKNCEINVNECAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNCDNPIHTVGRLQECKNDPCR------------------------HGSTCYMQAGKEKCHCTAGYTGRYCQIDIDDCVTHKCQNSAQCIDRV 1150
            +G C  P +C CS GW+G  C ECV  PGC+HG+C EP++CNC   W G  CD  +   G  H   N        PD+  C C  G++G NC++ +  C   PC NG  C +    + C CP G +G  C +DI D C   PC  +   C+D+  G+EC CP  W G  C  + + C   PC+N+  C N+   YYC C  GW G NC  N NDC GQCQ+  TC D V+ Y C C  GF G++CE+  +ECA SPC + G+C+D  +G+ C C  GFSG  C V  D C   PC+N   C     DY C C   + G+NC  P       + C    CR                        HG       G   C C +G+TG YC  +IDDC+   C+N   CID V
Sbjct:  253 HGGCTVPGECRCSYGWQGRFCDECVPYPGCVHGSCVEPWQCNCETNWGGLLCDKDLNYCGSHHPCTNGGTCINAEPDQYRCTCPDGYSGRNCEKAEHACTSNPCANGGSCHEVPSGFECHCPSGWSGPTCALDI-DECASNPCA-AGGTCVDQVDGFECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQCQHGGTCKDLVNGYQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADGFHCHCPQGFSGPLCEVDVDLCEPSPCRNGARCYNLEGDYYCACPDDFGGKNCSVP------REPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEV 655

HSP 2 Score: 157.918 bits (398), Expect = 1.873e-41
Identity = 138/482 (28.63%), Postives = 200/482 (41.49%), Query Frame = 2 
Query:   38 SPYKCSCSRGWKGYTCG----ECVVGPGCLHGTCDEP---YECNCSEGWSGGTCDT---------CVKA---------------PG----------------CVHGAC--NLPD--ECNCDIGWTGENCD-QKVTCDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNCT-ERDMCSLDPCVNSHEC------------------------NNIGNDYYCSCKHGWSGKNCTQNSNDCHGQ-CQNNATCVDKVSEYLCECQPGFSGKNCEINVNECAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNC---------DNPIHTVG------------------------RLQECKNDPCRHGSTCYMQAGKEKCHCTAGYTGRYCQIDIDDCVTHKCQNSAQCIDRV 1150
            S ++C C  GW G TC     EC   P    GTC +    +EC C E W G TC           C+ A               PG                C HG    +L +  +C C  G+ G +C+ ++  C   PC +G LC   +D + C CP+G +G  CE+D+ D C+P PC ++ A C +    Y C+CP  +GG NC+  R+ C    C     C                        +  G ++ C C  G++G  C +N +DC GQ C+N  TC+D+V  + C C  G+ G+ C+ N N+C   PC ++G C D +N + C C  G+ GK C     +C    C N G C    + ++C C  GW G  C          NP    G                           +C   PC +G  C       +C C  G+ G  C+I+ID+C +  C   A C+D +
Sbjct:  367 SGFECHCPSGWSGPTCALDIDECASNPCAAGGTCVDQVDGFECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQCQHGGTCKDLVNGYQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADGFHCHCPQGFSGPLCEVDV-DLCEPSPC-RNGARCYNLEGDYYCACPDDFGGKNCSVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRCYDLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDEI 846

HSP 3 Score: 149.828 bits (377), Expect = 1.009e-38
Identity = 126/398 (31.66%), Postives = 181/398 (45.48%), Query Frame = 2 
Query:   44 YKCSCSRGWKGYTC----GECVVGPGCLHGTCDEP---YECNCSEGWSGGTC----DTCVKAPGCVHGA--CNLPDE--CNCDIGWTGENCDQKVTCDMQPCENGA----------------------LCLQHSD-------NYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNC-TERDMCSLDPCVNSHECNNIGNDYYCSCKHGWSGKNCTQNSNDCHG-QCQNNATCVDKVSEYLCECQPGFSGKNCEINVNE-CAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNCDNPIHTVGRLQECKNDPCRHGSTCYMQAGKEKCHCTAGYTGRYCQIDI 1096
            Y+C C RG+ G  C     EC   P    G C++    + C+C +G+SG  C    D C  +P C +GA   NL  +  C C   + G+NC    +   +PC  GA                      +C  H         N++C C  G  G +C  +I D C   PC ++   C+D+   + C CP GW G  C T  + C  DPC +   C ++ ND+YC+C  GW GK C      C    C N  TC D    + C C PG+ G  C +  N  C  +PC N G C      + CIC+ G+ G+ C+   + C+ +PC N G+C    N ++C+CA G+ G +C   I       EC++ PC +G+TC  +    +C C  G  G  CQ  I
Sbjct:  482 YQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADGFHCHCPQGFSGPLCEVDVDLCEPSP-CRNGARCYNLEGDYYCACPDDFGGKNC----SVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENI-DDCLGQPC-RNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRCYDLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINI------DECQSSPCAYGATCVDEINGYRCSCPPGRAGPRCQEVI 866

HSP 4 Score: 142.124 bits (357), Expect = 3.480e-36
Identity = 94/266 (35.34%), Postives = 126/266 (47.37%), Query Frame = 2 
Query:  236 CNCDIGWTGENCDQKVT-CDMQPCENGALCLQHSDNYTCQCPKGLAGIHCEIDILDHCDPFPCTKSSAICLDKPFGYECSCPLGWGGVNCTERDM-CSLDPCVNSHECNNIGNDYYCSCKHGWSGKNCT--QNSNDCHGQCQNNATCVDKVSEYLCECQPGFSGKNCEINVNECAVSPCQNQGVCKDQINGYKCICQTGFSGKNCSVVFDRCSEIPCKNDGLCTRFHNDYKCKCAKGWTGRNCDNPIHTVGRLQECKNDPCRHGST 1021
            C CD G+TG  C + +  C  QPC NG  C+   D + C CP G  G  C+ +  D C P PC  S   C D    + C+C  GW G  C  R+  C    C N   C + G+ + C+C  GW G  C   +NS+     C N  TCV   + + C C+ G+ G+ C  N N+C   PC N G+C D +N ++C C  GF+G +C +  D C   PC     C    N Y+C C  G  G  C   I   GR    +  P  HGS+
Sbjct:  622 CICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCFCPSGWEGELCDTNPND-CLPDPC-HSRGRCYDLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDEINGYRCSCPPGRAGPRCQEVI-GFGRSCWSRGTPFPHGSS 884
The following BLAST results are available for this feature:
BLAST of TCONS_00007560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JAG25.361e-7438.20Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3[more]
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