TCONS_00007071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007071
Unique NameTCONS_00007071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007071 ID=TCONS_00007071|Name=TCONS_00007071|organism=Clytia hemisphaerica|type=transcript|length=1090bp
ctgCAAATACTTTATGGAACCTCTTACAAAACCATACTTTGAATCGACCC
AAAATCACGATCAGGTCTActgaaaaagttcaaaatgtCCTTATTTTAAA
GGTTATGTAATCCCCCCTAGATGCAAAAGTACCTAGTCAATTACTAAAAT
ATCTTACATAAAAGTGTCTTTATTGTTTTAAATAAGCATCAGGTCTTTGT
AAAACTTCGTCCAGGTTTTGTAATAATCGATATAATTCATCCTCTTGTAG
ATTCTCGAAATAGTTCAGTTTTGGAAAGAAGAAATCTGGACATAATTTCC
TTTCAAGACATCTCTTCAACGCGATCAAAACATCTATGAATCGTTTGCTC
ATATTCTCTCGGCTCCAGTCTTTTTGGTCTCGATAAGACTCGTGTATCCA
GAACAAAATCATGATAAAATGAACTGGTAAAAGAAGACCACTGCAATCAC
GATGCGATAACACAGATTTGTTGATGACTTGCAAGGCGAGTAGGATGTTG
GTGGCTGTTTGATACCCATCACAATGATTCAGCAAAATCTTCCTGGTCTT
CAAGAAAGAAACGCCCCAGGCGTGATTTTTGACTTTACCAGGGACCGCCA
TTAACTTCTGATGTCGATCAGTGTGGAGAACCAgTAAACGGAGGCTGGGG
CGAGTGGAGCGCATGGAGTATTTGTTCCGTCACCTGTGACAGTCAAAAAC
AAGGTGGATTTCAGATTCGAAGACGTGAATGCAGCGCACCGATCGCTGAA
TATGGGGGAACACCATGTAAAggagaaagtgaagaaaaactGTACGGTTG
CAATGCTGACGTCATGTGTCCTGTGAATGGCAACTGGAGCGAATGGATTC
CATCCGGTGAATGTTCCGAATCGTGTGGTGCCGGAATGATCACTTACATC
CGAATGTGTGATAATCCGGAATCACAATATTGCGGAACTGAGTGTCAAGG
ACCCGCAGTGAAAGTTGAGAGTTGCAACAATGGAGAATGTCCAACAACTA
CCACCACTCCAGAGCCTACCACCACTCCAGAGCCTACCACTACCCCACTC
CCCACCACTACCACTCCTAAACctaccaccaccaccacca
Run BLAST on NCBI

transcript from alignment at sc0000073:429652..444453-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007071 ID=TCONS_00007071|Name=TCONS_00007071|organism=Clytia hemisphaerica|type=transcript|length=14802bp|location=Sequence derived from alignment at sc0000073:429652..444453- (Clytia hemisphaerica)
CTGCAAATACTTTATGGAACCTCTTACAAAACCATACTTTGAATCGACCC
AAAATCACGATCAGGTCTACTGAAAAAGTTCAAAATGTCCTTATTTTAAA
GGTTATGTAATCCCCCCTAGATGCAAAAGTACCTAGTCAATTACTAAAAT
ATCTTACATAAAAGTGTCTTTATTGTTTTAAATAAGCATCAGGTCTTTGT
AAAACTTCGTCCAGGTTTTGTAATAATCGATATAATTCATCCTCTTGTAG
ATTCTCGAAATAGTTCAGTTTTGGAAAGAAGAAATCTGGACATAATTTCC
TTTCAAGACATCTCTTCAACGCGATCAAAACATCTATGAATCGTTTGCTC
ATATTCTCTCGGCTCCAGTCTTTTTGGTCTCGATAAGACTCGTGTATCCA
GAACAAAATCATGATAAAATGAACTGGTAAAAGAAGACCACTGCAATCAC
GATGCGATAACACAGATTTGTTGATGACTTGCAAGGCGAGTAGGATGTTG
GTGGCTGTTTGATACCCATCACAATGATTCAGCAAAATCTTCCTGGTCTT
CAAGAAAGAAACGCCCCAGGCGTGATTTTTGACTTTACCAGGGACCGCCA
TTAAGTGAGTACCGCCTTTTACGATTTTCGACTTCCCTTCCATTTCTGGC
CATTTCCGATTCTCATTCATATCAATGATATTCGGGAAATCATCTACGTT
GAAAGCCAATAGAAGACCCACATCATAAACCGGTTCGGGTTGATCGGGAA
ATTTGATGAGTAATCGGACTTCATTTTCGGACACGACTTTGAATTCAACA
TGAGCGTCCGATTGAATGTCTTTGCGCTTTGTTTGTGAGTTATACTCGAA
CTGTGGCCGCACTTTAGTGTTCAAAACATACGCGAATACAACCATCATCC
TACCTGCAGATAGAACCCAATCACCGCTGTCACGGTTGCGCGCACAAAAT
TGTTTCAACGCCTGTCGATTCTCGCTCTTCAATAAGATATAAGCAGCCAG
ATCCTTTTTGATTAAGAAATTGACTTGGTGTTGATATTGGCTCAAATCCT
CGATGTTCAAATACAAATCAATACGATGAGGACCTCGTTTCTCGAAGTCA
CCTTGGTAAGAACATGGCGTCACTTTGAAGGGGAAAGCATCTTTAGGCAT
AGAGTCAAGTAGCTGGTTCACCAAACTGGTGATTTTGTGTAACGATTCAT
AGAAAGTCACTCTCATATCTTGTCCCTCTTTGTAACCACTCTGCGTTATC
TTACTATTTAAAATGTCTAGTTCAGATATAGGGTGATTCGATTCTCGATA
TTCGTTCGGGTTTGTTTTGGGATCATTCTGGCTGTTATCGGCCACCATCC
AATCCATAGAATCCATGAACAACATTCGGTTCATCCCACTTTCTGATCGC
AATCGGCGGTCAAGGCTTGTAAGGCTGTTCAAAGCATCACTCTTTGGTGT
GTCGGAGGCTTTGACTTGTTCGATTGGTTTCTTGTTACGGAACACCAATT
CGTTCATACTTCCAGTCGCGCTGTCTAATTTCAAGTTGTAATCATAACTT
TTCTGTGTGCCATCACTGGTTGAGGTGACTTTTCCGCACCATCCTTTTGC
CAGCATGACAGTGGTTCGATTCTTTTCATCCATTTGAACTGATTCTGAAC
CGAAGGACTGCATCGAATGGTTACTGGACATGGTATTCGATTGTATTTGT
CGGCTGTATTTTGAATTTTGTCGTGAAGGCCGTTTTGTGTTGTCAATGAC
AACGGTCTCTTTGCTATGATATACGTTGGATGGACTTTGAGGCGTTTGCG
CGTCGTCGTGAAAATCGTTTGAGCGACGTAGATTTGTGGTCATGTTGGCG
AAATTAAGATTCTCCAACTCAGTGGTGTTGACGTTAGAATCAACGGTATC
TACACCGAATAAGTTGGGTTCGCTTTTCGACTTCGGCATTGTTGGACGTC
GGACGAAATTCGGGTTCTCAATTTGCCTTGTAGAGTATGGATTTTCTGAT
TGAAAATGTTGTTGATATTCCGCCATGATATCTTGGCCATCTTTGCGACC
GAATGTGACGTTCGGGTTACTTTTGCTACTATTTGTACGTTTGAACGCAC
GTGGCTGGTTCTGGTTGCCGCTGCCTTCGATTTCAGTGTATGAAGTGAAG
ATAGTCTCACGGCTGTTTGATCGGTTCCCATGGAAATAGTCACGTGCTTG
TGTTGTAGGCCCTGGGTTGACTTTCTTTGCTGGTTCCATTCGAACCCAGC
CTTCATCATCACGATGCATGCCGGTGCTTGATCGTGTACGGTGCTCGATG
AATCGTTCGTTAGATGACATTTCCGCTTTGGTTGGCCCCATCTTCGGTTC
CGGTGTTTTTGAAGGACGTGGTTGGTTGCTGTATGAGAAATTTGGCTCCG
TTTGTTCGAAACTTCGATTGTGACGTTGGTTTTCTGAATATATTACTGTG
GAGACCTGCTGTTCTTTCGTCATCAGAACTCTCTCTTGTGGAAGGCCATT
GGAAAAATCTCCTGTCGGACCATGGCCATTTTGGCTTGCGTGTGCTTGGC
CGTTGGGGAAATCTCCCCTTGAAATATGTCCGTTTTGGCTCACACGATGT
TGCTCGTTGAAATTTCCTCTAGGCTCGCTACCATTTTGAATTCGGTTGTA
GTTTTGTCTGTTGTTCTCTGAGTAGAGTTTATTGTTCAATTTTTCAATCC
TCACGCGTTCCCTCTCAGCATTTCGTTCATTCTGGTCTACAAATTCTTGC
TTGGCGAGTTCAGCATGATTCTGCGAGTTCTGTGAATGTTCGTTATTTTT
GTAAACATGTTTCGATTTATAGCCGTTCAACACCTCATTGATATCGAATG
CTTTTGAAGAGCTTTCAGCCAGTACGTATTTATTGTCTTGTTTTGGTTTG
TTGGGATCTTTATAAGGTGAACCATTTAACTCATGCGCTAGTTGTTCGGC
GCGCGGTGTAGATACTGTACTATACATATCTGCGTGACCGTTCTGTCTAC
CATTAGGGATAACATCTTGTGCAGGTGATCGCAAATCTTCTGGCAAGAAT
GAGAATTGGTTTTGTTGGTTTTCGAGGTCTAATGTCATTGGTTTGACTTG
TCTCGTATACAAGGTTTGCTTATTCCCAGTCATTTGATGATCACCGTTCG
GTTGTTTATATTGTCGCAGTGATTGGTAGATGTGATCTTTATATGCTTGC
GCATTCATTGACATAGGGTGGTCAGAGGCGGTGTTTTCGTGTACGGGCGG
CTCTGGAAGACGATGATCGTTATTTTGTTTATGGTACTGGGCGGTTGGAG
GCGTGTATCCTCGAAGGCGGGCGTTCAATTCCTCGTTTCGTTGTTTTTCT
CTTTCGATTTGTTCGCGCGACATATGAGGGACGGATGAAGGGGCGCCGTT
GTGGTGATATTGTTCCGGTTGTGGTCGTTCTTTGATTGTACGTGTGTTTT
TGTAGCTTGATAGAACCTGATCGACTGGGATCGCGTCACCTCGTTCTGCC
ACTACATTCTCGTTTGGTCTTTTCTGTTTTGGCTTGCTTTGGTGTTGATG
TGTTGGTGATTGAAAATCGTTACTGATGAATGAGAAATCGTTTCCACCAG
TTCTCGAGTCTTGCGCTGGAGGTCTTGTATACATCGTCCGCGTACCTCGA
GCGCTTGACGGACGTGATGAAATATTGTCCGCCGCGTTATTTGCGTCAAN
CGTCCGTGTACCTCGAGCGCTTGAAGGACGTGAGGAAGTATTGTCCGCCG
CGTTATTTGTCTCAGTGTTACCGTTCATATATTTTTGACGATATTCATTG
ATGACGTCACTTGCGGCTGTCTTCGCTCCGTTTACTGGTTTATCCGTATA
TTCTTGTTCTGGAGTTTTTGGCTTTTTCCGTTTGATGGTGTTTATGTTTT
CATTTTGTCTGTAGTAAGAATCTCCGTCCGGTTTGACGGCTTCCCGTGTT
GTTTGACCGTACTGGCTTTTGAACATCGGTGGTCCAGTGTTATCTTCACC
AAAGTTGATTGGTTGTTGAAAATTTAAAGGTCGTGGCGCGTCGCCGTTCG
TGAAAAGTCGTTGTTCTTTACCATAAATATTGCGAGGACTCCGTCCATTC
TTAGACGAAGAATTTCTTTTCTCGCTGACTGCGTTTTCATTTTGTTTCCA
ATTGATGATTTGGTTTGCGATTGCTACCGATGACATTGTTTATCTTTCAG
CGCAACACGTCTCTTTCTTCATACCAAAATCAAATAAAATTGTTTTTTTC
AACAAGTCTTTTTCTTCTTTTTGATGAAAAAAGTAGCGAAAAACTTCATC
AATTGATTAATCATTCATATGGTATTTTTTCGATTCATTGCATTTTTATT
TTTAAACTTTGAATTTCTGATTCAATTTCACGTTTGATTCAAAGTGAGGC
TGTTTGGTTTCCGTTACCATGGCGATCCATGAAACACTTCATACATTGAA
TACTGAATGTGAGCATAAAAACAAACGCTGAGTCAACGTTACAATCAAGT
AATATTGGGAAACCATCAAATGGCATCCTGCCTCCCTCTTTTCATTGTAA
CCAAGGAATATTGAATATTTCTTTCATCAGTATTTCGATATGTCGTCATT
TTTTCCTCTCGGTGACTTTGATCTCCCGCTGTGTCTTTGAGGGAAGGGTC
TAATCTTAGGAAGCCACCTCATTAATATTCATATACGTAAGCTTTGATTC
TTATTTTAAACTAGAAATAGTTTCATTGATCTCCAAAGTTTAAATTTGAT
TAAAGGTGTGATACTAAGTGAAAGATTCGCCATATTTCAAACGATCCTAT
CGTCTACACTCACTAGATCATTAGAAAGGGACTAGTTTTAGGGGGTGGGA
TGAATTTGAAAAACGGGGCGGAGTAAGCAGTGACGAAGCTGTTTACAGTT
TCTTCCAAACTCTACCCTAAACCGCCGTGAAGGCTGTAAATTCTGCGCAT
GTATATTTTCTTGCGTTTACTATCCCTGCTCTAACGAACGATAGCATCGT
CTAAGCAGAGCGTGGCGTGCGCATAATGGATGATCTGCTTTGAGATTATA
AAAAGCTGTTATTTTTTCAAAAGTTTTTCATTTTGGACTAGTAAATCTTT
CTAAACTGACCATTGAAATACAATATTTTAATTTCATAAGAACAAAAGGG
GCTTAAAATCGTCAATAATTAAGAACAATTTAAGACCGATGCTGAGCCTA
AAATGCTGAATTTTAAGCAATTTTACGGTCTTTGTAGTAAAAATATCAAT
CAAGTTAATTCCTAATTCCTCACTGATGCCCTTTAATTAAGAACCAGATA
AGAACAAACTTAGACTAAAAGTGCTAGAAGGATCAGAACAGCTGAACCTC
GACTCGACAAAAAGGGGACAAACATTTAGTAATGTTTATAAAGGTAGGAT
AAAGATAGGTACATTTTGCAAAACGGGAGAAAAAGAGGGAGAGCTAGTCT
GAATCGCAGACCTCTACAAAACCCCTGGTAGTAAAAGGAGCACGAATCCG
TTTGCGGATGCCAGCAGCCTAAGGGAGAGCTAGATTTAGGAATGGCGGGG
TTAGAAAGGGCCGCTATGTCCAACTATGAATGAGTTTTATCTTTGTCTGA
AAATCTGAAAAATGGGATAGATAAAAGAGCAGAAATTTCAAATTATTCTT
TTTCTTAAAGGTATGCTTTCATTGTTTTTTTTTCGACTTTATGACAAAAA
GGAATCACATTTTTGCTACTACTGTCTTGATTGTGTTTTGGCTCCAGCTC
GAATTCTGATTGGTCGTTGCCCATCCTTTGCGATCAGCCGTGGTACTAAA
GAGAGACAAAATGAAATAAATTTGATACCAAAATAAGACACTTTTCTAGG
TAACCTCGTTCCCAACGTTTTTATTTTTAGTGCGATGGTGCCTCATAATA
CAATAAATAGGATACTTTAAGTTAAGTAAATGAAGGAAATTTGGCGGAAA
TTTAATTATAAAAAAGAAATCATTTTCAGAAGGAAATTTACGATACATGT
TTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTCGG
GGTGAATCATAAGCATAATTCTTAAGCATGTAATAAGCATAAACTATGCC
TGGATGCTTTGAGAACTTAAGCATACACGAGCCTGACAAAGGGGCATACA
CTTGCTTATAAAAAAAAAAACATGTAAGCGAAAAACCTGTGAATTTAGGA
AATGCATGAAGAGAAATTTTAGAGGGAGGGTTAAGGTATTCTCTTTGTGT
CTTTTTAGTAGCGTAAATAAAACCTGTAATTACAGGGGCGAGATTGACTT
CTTGTTATGAAAAGGACCAAATCAGATGGTAATACACCCCCTTCTCATAG
ACCCACCCTTCCCACTGGAAAAATTGGCCAAAATATTGTCCCCAGTAGAA
AATTAATCTTGAAGTTTTGTCCCCGCTGAAAATTGTGCTATTTTTTCCAT
CCCCACTGAATTTTCTGGAATATAAATCCCCATCGATTTTGGTCCCACTA
ACTGATAAAATCATACCGGGTCTGAGAAGGGTTGAAGTGGAAGTTCGATC
ACCTTATAGGGCGGTTTTAATTTTTTCGAAAAAAGTGACACTGAAAAATG
AGGGTCGCAAGTTTCTCTCAAAGGGGTTTAAAAAACATTAAATTGAGTCT
TTAAAAGAGGTCGATTAAAGCGTTGAGCGAGGAGTGGTCTCAAGAAATTT
TAACAAAAAGGGGAGAAGTCTCAACGTGAAATATATCAAGTAACTTTGTT
TTTTAAGTGATTTGTGGCTTTAAAAAAAGCCGTTTTTTTATTCCAACAAA
TCTATTTGCTGCTGGTGTATTTTGTGACAGCTTTGGTTCCTTCTGAGACA
GCGTGTTTGGCCAACTCCCCTGGAAGCAAGAGACGAACAGATGTTTGAAC
TTCACGAGATCCCATAGTCATTCTTTTGTTTTGGATGCAAAGTCTTGATG
CTTGACCAGCCAATCGTTCAAAGATGTCGTTGACGAAAGAGTTCATGATG
CTCATGGATTTGCTTGAGATTCCAACATCAGGGTGAACTTGTTTCAAGAC
TTTGTAGATGTACATGGTGTAAGATTCACGTCTTTTGCTTCTTCGTTTGG
TTGCTTTGGCACCACCTTTTCGTCCTCCTTTCTTCATAGCTTTGCTTGCT
TTTTTTGGGCTTGCAGCTCTTGATGCAGGTTTCTTTGGACTTCCAGCCAT
TGCTTTGAAAACTTTTCAAGTTCGAAGTTACCACTTATCGATGATGTGTG
ATACTTCCCTAAATGTCTTTCACTCATTTATGTTCAAAAAGTGGATAAAC
AGACGTTCGAATATTTTCACATTCGAAAGAATTCGAAAGATTAACTAACA
TTCGAATTTTGAAAATCGAGATTCCTTTCACGTCCGCTAATTTCGTCGAG
CTCAAAAATCGCTCGAAGGATAAACGAACGTTCGAAAGTTCTGAAATAGA
TGGTCCATCAGCGTCCGCGATTCCACTAAACGTTCGAAAGTATTAAAGGG
ATAAACGAACGTTCGAAAAGCTTATTGACGGGAATCAATCAACACTTTAC
AAATTTATGAAAATATTCGGTGCCAGACTTTGTTAAAAAATAAGCAAGAA
GACACGTACTCCAGTTTTCATAAATCTAACAACAAAATGCCTCGTGGTAG
ACGATCTTCAACTAAAGGAACTACTCCATCTGCAAGCCAGGACACTGAAA
ATAAAGAGGTTACTGATGCCCCAGCTGTTGAAACTAAGGAGAAAGCAACT
GAAGTCGAACAACCAGCTCAAGTAGAGGAGGTTTCAAAAGCCGAAGAACC
AAAAACTGAAAGCCAACCAGAAAATGTCGAAGGGGAGACGACAGAAGAAG
TTTCGGACGAGAAGGATTCAGAAGATAACAAACGAAAAGAATTATCACAA
GAAGAAGATGCGACTACCCTCAAAAAGTTGAAAACTGATGAAACTGTAGT
CCCCGAAGAAAGCAAGGAAACTGTCCAAGCAGCCAACTAATTGGTGATTT
TTTAATTGTAGTTTTTGATCTTGTATTTTTTCCTTTTGTAAATATTTTTT
CATGTAGATAGAAGAATTCAATAACTCAAAAATCAATTTAAAGTTTCTTG
TATTCATAACTGCAAGTTCCAAAGCTATAAAGTGCCCTATAAAATTTCGG
ACAAAGTTTTTATAAAAATAGCAGTGATTTCATTGACTAATTCGACAGCG
AATTGTTATTTGCTTCGACCTTTACGAGTACACGTTGGTACTTATCCAAC
GATCGTGATTTTCGTTCGAACTTGTTCGATTGTTGTATTGATGACAGTCT
GGGAATTTCAACGTGAGAAACGAAAATCTGAAAATTTAAGTCCTCATATC
TTCTTTAGATTGTGTTTTTTCTTCAAAATATTCGGTGGTCTTACTATACT
AGGACCATGGAATGAATCTCTGAGCTAAGTTTTATCTGGTTATCCTTTCA
TAATCAATTAGCCAAGCTGGAAAGGATTTCTGGCCAAAAATATCCTTCAT
TGCAACGTCAAATTCACTTTTCGGCCATCCGCCAAATTAAATTCCTTTAC
TAAAAATTCTGTTTCCTCTAAATTTTGATTACGACACGGACTGAAACTCG
ATGGGGATTGAAATTCCCATGTTTTTTATGGCTGAGGATTCCTTTGTTTT
CAAGTCAAAAAATTCAGTGGGGATGGTAAAAATAGCATAATATTTTGTAG
TGAGAATTGGTTGTTTCATTCTTTCAGAGGGGACAAAAATTGGAGGATAA
CTTTCTACTGGGTCAATTTTTCCAGTGTGTCTGTGAGAAAGGGGTACACA
ACTTGTTTCTCACTTTCTTTAAACACGTTCACTGCCAAGCCTTTTTCAGT
GCGGTACTTCGGAATGCTGAAATTGTTTCGGTATCGGAAATCCATGAATT
TATGCTTCGGAATTTCGGTATTATAAAGTTTTTATTCCCCCTTTTCGGAA
TTCATACATGAAAAATCAAATTTGATGAAAAATTAGTCAAAACGAGGAAA
AATACCCAAAAAAATCAAACGACGTAGATCTAAAAGAATGCCATGTATTT
ATGCAAGTAATAGCTTTTGCATCAAAAGTTATGCCCCCTTAAAGTATCAT
CCTTATTTTGACCATATTTTTAAACAAAAAATCCTCTCAGCCGCGAAATT
TAATTCCGTGAAACTTCCGAATTTTGAGCTGTGAACCGTTGTGAACTGCG
AAGTTAAGTACCCGCAAAAATTAAACCCATTAAAGTATGACAACTCACCT
ATGCCGATGGCAGGCCTGCTTGGTGGTCGGCAACTTTTTTGTTTGAGTTG
TTTAGACACGTTCGCTAGTCCGGTATACTCGTTCGGGTTTTGATAACTGT
ACCGATTGGTCGATTTCAAACTTCGATGGATGACTGGTGGTGCACCTGAA
AATAAGAAATTATTATAACGGGGTGGGTGAGAAAATCATGATGATCTGGT
TATAATTATCTACCTTTTATGATGAGAGAGGTTATTTCGAGCTGATTTTA
GCAAAAGGGTAAATTGGTTCTTTTTTTTCGACAAAATTAGGGAATATTTT
AGAAAATCATGAAAAAACTTTTAAATTTGAAAAGGCAGCAATTTTGTAAA
TTTTGCTAAATTCGCCAAACTCGACAAAAATTAACCCGCTTTTGCATTGA
AATTGAAATATCAGATAGGGGTCCCAAGTAAAATGCTCCCTTTCGTAGAC
CTCATCATACGTAATTTTAAAGCAGGCTTTCAGCAGAATGAACATATCAA
ATATCCAAGTTAAATCTGACCAATATTTGGAAACTTGATACGATGCTTTC
CTTTATTAAGCAAATATACTGAGATGTTCCTAAACATGAAAACTGGTCGA
CTCCAAGTCAAAATATTTCTCGAACACCCCCCGGACATTGTGACTTTTGA
CCCCCGGACAACAGTTCTAAACCCCCGGAGAAGCATCAGTTGGCCCCCTG
GACATTCAAAATTACCCCCAAGTAGAGCAAGTTTACCCCAGGACAAGGCA
AATTCTTTAGATTTTTCACTACTCTCTCCCCCCCCCGGACACTAAATCCT
CCACTCCTCCATGTAATTAAGACAATTTGGCAACGACAGTTTGAGAACGA
GGCCCTCGATGACATTCATTTACTAATTTATATTTTATAGAAAGAAAGTC
TTCTTTCATCACACATCAAATAAAGCTGAAATGCCAAATAACTTTCTAAA
AGTTTGGTCATTTGAACAGATTTCAAAATATTGACGTATTTCATATGTTT
TCAAACGTGCTTTGATTAAAATTTACCCGTAAACTTTTAGGGGGATAAAT
AGCGTGAAATTTCTATGCAACATTAGCAGTAGAAACATTTGATTTGTGTT
GTTGGGTCATCATTAGAATAAAATTCTTTAGCCTCTCTCGAGTCCTTTAA
CGAAAATGATAACTACTGTGATATATCTTATACTTTTAACAATATCTGCT
CAAAGTAATGTAGAAATATTTTAATACCTCAAAAGTTTTAAATTATTCGT
GTAGATTTTCTCCATTTATCCCACAAGTCATTTCTCAATCTTTCCTTTCT
TTCTTTTAGCTTCTGATGTCGATCAGTGTGGAGAACCAGGTATTGAAATA
TTTTCTGAGCATTTCTACCTCTCGATTTCTATATTCTCAAAACAGCTCTA
CATTCCCGTCTAAAAAACCTTTTCGGAAATCTCAGAATCTACAATATGCA
CTTCAAAATGGCAAAAGGCGAGAGCAAAAGATATAACGTTGGATAAATAC
AACGGGCTGATGATTTTAATGTCAACGCGTCGCCTCTGTACCTGCTAGGT
GTAGGTTTTGTTTCCAAACTCGAAATCTCTCCCCCCCCCCACTCCAAGTG
AATTGTGATTTTATTCATAACTTTGTCTTATAAATTTTTTCTTCTTTTCC
GCCACAGTAAACGGAGGCTGGGGCGAGTGGAGCGCATGGAGTATTTGTTC
CGTCACCTGTGACAGTCAAAAACAAGGTGGATTTCAGGTTAGCAGGCAAT
ATTTTCAAGAAAAAGGCCGGAACAGAGACCAAGCACATACACGTTTTTTT
TTTTATTAGAACCTAGTTTATAAGAACATTGAGGCTGAAATTCGTTGAAA
AATTAAGAACATCGTAAGAACATGCCCAGCCTCAGTTTGGAAAAAAATGA
CAAGAAACTACAATTTTTTCCTCTTTCAAGCAGTTTTAACTGAAAAATTA
AGAACGCATTTAAGAACATTTTAGGCTGAAAATTTCTAAAAAAATAAGCA
CATCCAGGCTTAGCCAAACTTTAGGTGTTCTAATAAAAAAAAACGTGTAT
TTCCTTCCCTATAACTTTCAACCTAAGTGGGGATAAAGATCATGTTATTC
AATCACCTAATCAATAAAAACGAATAGAGATCTGATCCCACGGTGTCCTG
TTAAAAACATTTAAGTGATTCTTGCATTTTGCTACAAAATGATGGAGAAG
CAGGAGACGGGCATATCATAGCAAGAAATTCTCACGCTTATTTGTTTATT
TAGATTCGAAGACGTGAATGCAGCGCACCGATCGCTGAATATGGGGGAAC
ACCATGTAAAGGAGAAAGTGAAGAAAAACTGTACGGTTGCAATGCTGACG
TCATGTGTCCTGGTAAGTTATCATGTGCACTCGATCACCTACCTAGAGCT
ACGTGTGCAACTTTTGATTTTACTGTTATGGATGTATAAAGCCTGCAATC
AGTGACGAAATACTTGGCACAAAAGGGAAATCCACCGGGAAGTCTTGAAA
CCATAATCGATTTGCAAGTGCTCTAAAGTAGGTTCGAAAGGTAGAGTTTT
AATTCTGAGTTTTAACGCTAGACTTAAAACTTAGGACCTTAGGATCTGAG
GATCCAAAAGTTCAAAAATATAGCCTAGAAACCAATAAATCCCTCCCAGA
TCGAAATAATCGATCGCAAATCAAGTTGAAGGCCTAAAATTGACATTCTC
GCTCGAACTTCAATTTTTGAAAAATGGTAAATTAGCCAAAAGTGCCAATA
TATTATGGCACTGATTGTGAGCGTTATCAGAATCACAAAAAAACGAACTA
AGGGACTGGGTTCAAGTTTAACATGTTTTGCAAAGTTTCGAGTGCTTTTT
TTTATCAACTGATGACCACAGTACAAACAGTACAGTCAAGCACTAATCAA
AATTATATAAAAGCAAAAGCCATGGGATCATCCCCCCCCCCAGGAAGATG
GGGGGGGAATCAGATTTTGGTGCCAGGGGGGAAGTGAAAATTTCAAGCTT
GATGGGGGGAGAAAGGCGAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCAGTCCTCTACCTAGTGGGGGGAGTAATAGGATAAA
TACAGACCTTCCTGGTGTGTTTGGGCATTCAGGCTTATGAGCCTGTCTTT
CTTGGGATTTTTTCTTGAGAGTCTTTTTTTTTGCTATAGTAGCTTTCGAA
TTGAGGCGAGTCTGGATCATCACTTCGCAACCCTTATACAATACGGCTAG
GGGGATTTCCCAATTAGGGGGGGAGCACGAATTTTAAAGACAGGTGGGGG
GGAAAGGCCAGATGGGGGATTTTAGCTCATATTAGGGGGGACCAAAAAGC
TGGAGGACGCCATGAAAAGCTATAAGAAGATTGTTGGACCTACCCCGGTG
GGGTGAAGGTCCTATAAATTAACCCGTGTTCGTTAGTTCGTTCGTTAGTT
ACCAACTTTTCTCGAGATTGGCTCATTCAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCAA
TAGATATATAAATCGAAATTTAAAATTATACATTACTTCCATTAAATTCT
AATTATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGTTCTA
ATTAACTTTGTTGAAGTAGAAGTGTATTAAAAGTTGATATTTTTTCAACA
GTGAATGGCAACTGGAGCGAATGGATTCCATCCGGTGAATGTTCCGAATC
GTGTGGTGCCGGAATGATCACTTACATCCGAATGTGTGATAATCCGGAAT
CACAATATTGCGGAACTGAGTGTCAAGGACCCGCAGTGAAAGTTGAGAGT
TGCAACAATGGAGAATGTCCAACAAGTATGTTAAGTTGAAGAACAGTATT
TTATTGAATGCTTTATGATTAGTTTTTGTTTTAGTTTTAATACATACAAA
CCAAACTGCTCTCTACAACTAAGCTCTATGCTAGAGAATCTAAACATGGT
CAGAAATCAATATAACATCTAAGATAAAAAGTAAACAATGGAAATAAGGC
AATTTTGCAATTGTACTTATCAAGGTATATTTATAGCGATAACTTTTTAT
TCTGTCTAGCTACCACCACTCCAGAGCCTACCACCACTCCAGAGCCTACC
ACTACCCCACTCCCCACCACTACCACTCCTAAACCTACCACCACCACCAC
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003956XLOC_003956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007071-exon-sc0000073-1575043694:443850..444453TCONS_00007071-exon-sc0000073-1575043694:443850..444453Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1575043694:433215..433244TCONS_00007071-exon-sc0000073-1575043694:433215..433244Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1575043694:432817..432896TCONS_00007071-exon-sc0000073-1575043694:432817..432896Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1575043694:432192..432300TCONS_00007071-exon-sc0000073-1575043694:432192..432300Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1575043694:429979..430152TCONS_00007071-exon-sc0000073-1575043694:429979..430152Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1575043694:429652..429744TCONS_00007071-exon-sc0000073-1575043694:429652..429744Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:443850..444453TCONS_00007071-exon-sc0000073-1510915933:443850..444453Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:433215..433244TCONS_00007071-exon-sc0000073-1510915933:433215..433244Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:432817..432896TCONS_00007071-exon-sc0000073-1510915933:432817..432896Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:432192..432300TCONS_00007071-exon-sc0000073-1510915933:432192..432300Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:429979..430152TCONS_00007071-exon-sc0000073-1510915933:429979..430152Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1510915933:429652..429744TCONS_00007071-exon-sc0000073-1510915933:429652..429744Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:443850..444453TCONS_00007071-exon-sc0000073-1491911889:443850..444453Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:433215..433244TCONS_00007071-exon-sc0000073-1491911889:433215..433244Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:432817..432896TCONS_00007071-exon-sc0000073-1491911889:432817..432896Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:432192..432300TCONS_00007071-exon-sc0000073-1491911889:432192..432300Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:429979..430152TCONS_00007071-exon-sc0000073-1491911889:429979..430152Clytia hemisphaericaexon
TCONS_00007071-exon-sc0000073-1491911889:429652..429744TCONS_00007071-exon-sc0000073-1491911889:429652..429744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:429652..444453 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.374034	0.872224	0	0.190547	0.975049	1.08328	1.42895	1.46966	0	0.582982	0.997264	0.306923	4.37452	3.64427	1.90241	4.11357	2.60388	1.95811	11.2836	8.96474	5.97362	5.38658	3.94998	5.27747	5.84089	7.89014	0.787612	0.228221	0.346253	0.375829
Blast
[Close]
BLAST of TCONS_00007071 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.382e-20
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:  631 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 990
            PV+G W EWS W  C+ +C      G Q R R C+ P  ++GG PC+G + E +  CN    CPV+G WS W P G CSESCG G  T  R+C+NP   + G+ C G   +++ CN   C
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGR----GNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697

HSP 2 Score: 92.4337 bits (228), Expect = 3.698e-20
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  634 VNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 990
            V+GG+ +WSAW  CSVTC      G Q R R C+ P+   GG PC+G S+ ++  C  +  CPV+G+WSEW    EC+ SCG G  T  R C+NP  Q+ G  C+G AV++  CN   C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGK----GIQKRSRLCNQPLPANGGKPCQG-SDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640

HSP 3 Score: 91.2781 bits (225), Expect = 1.012e-19
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:  631 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGEC 990
            P++G W  W++WS CSV+C     GG + R R CS P+ +YGG  C+G   +  + CN+D  CP +GNWS W   G CS +C  G +   R CDNP     G  C GP  +++ CN   C
Sbjct: 4698 PIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-CNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811
The following BLAST results are available for this feature:
BLAST of TCONS_00007071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.382e-2042.50Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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