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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006883 ID=TCONS_00006883|Name=TCONS_00006883|organism=Clytia hemisphaerica|type=transcript|length=939bp
CCAAAGATAAATGTAGAAAAAAAGCATCAAATATTTTCTGTTAAAAACAT
CATAgcatttaaaaattttacttaaaataaTTCGTAAATCATGACGATTT
GAATCTTGGTAAATTTCTTTTTATCCTTTTGTgtatttcttttccttttc
ttaCTCATGTATTTATCTAATTTACCAGATGCTTTCAATTCTTTATACTT
CTCAGCCAATTCAATCTTCTTTTTATCAGAATTCTTCAAATAGAAGGGTT
TCTTGCCACCCTCAGTCTGTTCCGCCATCTCTTTTTTACGTTGTTTTGAC
ATTTCACGACGTTTTGCTAGCTctgctttcactttcgattctgTGTCCAT
TTTCTGTTTCAGTTTTAATAATTTCTCCTTTTCTTCAGTATTTTTCACCT
TCCTCAGTTGCTTTTTGACAGATTCATACTCATTTTTCTTAATATCATCC
ACAAATGCGTACGATTTTTGAAACAGTTCCTCATTATATGCACCAGATAA
ATCGTTGAATCTAGGGTCCCTGGTACtccttttcatatttttaaCAACAT
GTCTAGGGCCATTAAAATTTCGTTTCTTAGATGACATCACTTCAGGCTCA
CTTTTCGATTTCTTCTTTAAAACTTTATCATCTTTTTTGCCATCTACAGT
CTTCcgtttcaaatcttttttagtCCAGCCCTCTTTATTACCACCAGAAC
TTGTATCGCCAGCATCTTCTTGAGCCTCGTTTTGGAGTCCAAACAACACC
TGGTTGTATTTCTTTAAACCAACTTGGTCTTTCAGTTTCTTGATCTCACC
CAAAGGCACATCACGCAATTGTTCTCTTAAGTCTTCTGCTTCCTCATCGT
CACTTTGTGGTTGTTCTGATTCATCATAACTTTGTTCTTCATTATCAGAA
TATTCTGAATCACTCATTTTTTTAATGTTCTgctaaaaa Run BLAST on NCBI transcript from alignment at sc0000072:336744..353280+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006883 ID=TCONS_00006883|Name=TCONS_00006883|organism=Clytia hemisphaerica|type=transcript|length=16537bp|location=Sequence derived from alignment at sc0000072:336744..353280+ (Clytia hemisphaerica)
CCAAAGATAAATGTAGAAAAAAAGCATCAAATATTTTCTGTTAAAAACAT
CATAgcatttaaaaattttacttaaaataaTTCGTAAATCATGACGATTT
GAATCTTGGTAAATTTCTTTTTATCCTTTTGTgtatttcttttccttttc
ttaCTCATGTATTTATCTAATTTACCAGATGCTTTCAATTCTTTATACTT
CTCAGCCAATTCAATCTTCTTTTTATCAGAATTCTTCAAATAGAAGGGTT
TCTTGCCACCCTCAGTCTGTTCCGCCATCTCTTTTTTACGTTGTTTTGAC
ATTTCACGACGTTTTGCTAGCTctgctttcactttcgattctgTGTCCAT
TTTCTGTTTCAGTTTTAATAATTTCTCCTTTTCTTCAGTATTTTTCACCT
TCCTCAGTTGCTTTTTGACAGATTCATACTCATTTTTCTTAATATCATCC
ACAAATGCGTACGATTTTTGAAACAGTTCCTCATTATATGCACCAGATAA
ATCGTTGAATCTAGGGTCCCTGGTACtccttttcatatttttaaCAACAT
GTCTAGGGCCATTAAAATTTCGTTTCTTAGATGACATCTATGGTGGCCTA
CAGAGACATTAGCGATATAATGAATTAGCTGatcgaaaaacaataaaaaa
gctcaattaaatttaattttactttcattttaattcatttcaatttcgtt
tcattttaatttcatttcattttgactttcatttcatttcattttgattt
cattttaaattccttttaaattcatttcaatttcattttaatttcatttc
aatttcatttcaatttcatttcaatttaatttcattttaatttcatttca
ttttaatttcatttcaatttaatttcaatttaattttaattttatttcat
tttaatttcattttattttcattttaatttcatttcattttcatttcaat
tgaatttcaatttaatttcaatttcatttcattttcatttcaatttcatt
ttaatttcaatttcaattcaatttcatttcatttcattttcattttcatt
tcaatttcatttcaatttcatttcaatttcatttcaatttcatttcaatt
tcatttcaatttcatttcattttcatttcaatttaatttcaatttcattt
taaattcatttcgatttcattttaatttcatttcattttcatttcaattt
aatttcaatttcattttaaattcatttcgatttcattttaatttcatttc
attttgatttaatttcattttaatttcaatttcaattcaatttcatttca
atttcattttaatttcatttcattttcatttcaatttcatttcaatttca
ttttaatttcatttcaatttcaatttcattttaaattcatttcaatttca
ttttgatttcattttaatttcatttcaatttcatttcaatttcatttcat
ttcattttaattttatttcattttaatttcatttcaatttcatttcaatt
tcattttaatttcatttcaatttcattttaatttcaaattaaattcaaaa
tgaattgaaaaaaaaatcacttcatgGCCGAGAAGGACAATAAGGGCAAA
GGCGTGGACGAGAAGGACATTAAATGCCCGAGAAGGACATtaaccttttt
tatttcaatctcaaattgaattcaaaatgaattgaaaaaaaatcgcttca
tggccgagaaggacaataagggcaaagacgtggacgagaaggacattaac
ctttttatttcaatctcaaattaaattcaaaattaattgaagaaaaaaaa
tcacttcatggccgagaaggacaataagggcaaagacgtggacgagaagg
acattaatcttttttatttcaatctcaaattaaattcaaaattaattgaa
aaaaaatcacttcatggccgagaaggacaataagggcaaagacgtggacg
agaaggacattaaccttttttatttcaatttcaaattaaattcataatga
attgaaaaaaaaggggatgagctggagtttttacaagatacttcactgat
tggtcatttgaagtgatagagatgacacgttctttagaaaaagtaataag
attcttttattacatcttaacttaacgaccaaccaaatcaaataagagct
tgtaaaaactccagcttgtccaaAAAAAAGATCACATCATGGGCGAGAAA
GACAATAAATAAGGGCAAAAACGTGGACGAGAAAAATGTTAGATTTCTGG
GAAGAGGACTATAAATTAATTATCATCTAGACTTGAAATGAGCCCATTTT
GAGGAGTTGGATGTTGTTACTGGTGCTTCTGCAAGTCTAATGGAGTTGAT
AGTTCAGCTGATGGTGGAGTCGACTGTTCTAGTGAGTCTAATGGATTCGA
TGGTCCTAGTGACTCTGATGCTAGAGTTAATCGCTCTGGTGAATAGAGTC
TGCTTGAAATAGTATTTTAACTGATCTAACAGAGAACTAGGACAAATTTA
AGTTTAATCAAAGCATTCAAAGCGTTCTGTTTCCTCTTCAGAAGGACTTT
GCTCTTAATATACATAAGTCTCGCCTAGAAATCTTAATGCATTTTCCAGA
AGCTAAACAGAAAATCTTAGAGGGATAGTCAGATGATTCTATGATAAtga
gaaaaactttaaaaggtACTTTAGGGGAAAAAACTTTCGAGTGGACAAAT
TCCCgaaattttttgcatttcactTCAAAGAAAATTAATGACCAAAGTTT
TTaggaatattattttttttcgtgaGAATAATCACTCTCGAATCAGGTTT
TCAGAACTTTTCACGGATTTgcccaaaattcgcgaaaatcgcgaaagttt
ttttcccctgaaaataatattatcaaaaagGACGTACAGCCTAATTAAAA
CTGGACTAGTTAATTTAGACTTTTTCATCCcatttctttttccaaaataa
ttccaataaaaagtttCCAATTAAACAAACTaatccaaaacaaaagaata
caATATGGCATAATTCTAAACAAACCATATAcattaaaaattttataaaa
gaattgaTTCGGTGAAAATTTGTTTTCCTACAATCaaggttgaaatatat
tgagaattttggttattttaacgtttttcaagatttaaagttccggcgag
aaagtcgatttgggccatctctttaatttaatcgaatatttcaatttggg
aggggttgacagacttccaggctaaattctgagccttattggactatttt
tgaacttttagatcctcagatcctaaggtcctcagGTCCTAAGTCTAGCA
TTAAAACACAGAGTTAAAACTCGATTGTGGTttaaaaacttcccggtgga
ttttccttttttctcaaatattacgaccttgATTGTATTATGCATCTTAT
CAAATTCTTCACCAGCCCAGccctctctgatgacgtcaaaaaataatttt
taaaagactTAATAATAGCTTGATTATTGCGTTTTTATTATTTCTAACTC
TAAGacaaattgcctgtcaaaaaagttaaaagtcaaTCGTCTGTTTGCCC
AAACTTTTACCAAAGTTCATTGAATTGTGCCAAATAATCTCTTTTCAGTT
TGATGAACTCCTCACTGGCATTTTCTGGTTTTATATTGTCCACAACACCC
AAGATTGTTTCGAAAGACTGCTTACGATTCTCTTCTATGTAGTCTGGTAG
GTCTAGTACTGACGTTTCGTCTGCAACTATCGTTAGTTGATCATCATTTA
GAAGCGTTTTGAAATTTTCCGACTCGAACTCTTCGGGATGCTCATGTATA
AATTCTGGGATGCCTGTCGGAAGgcttttgttttcctgtttcCTTCCTCG
CTGGTGGTTCCAAACAGTTTCTCGAAATACGTCTAGCTCTCTTTGTATCA
CTGGAATATACACAAATGCCAACATGTCACTGAAATAGACAAAcagtaaa
attagaaaaagtagaaatttcTCAAATCCTTTGTGTGAATTTTACGATGT
AAGTAtgtttttagttattttttaaCTAGCTTGTGAAGTTCATCGTATTA
CACGACGGTGTTATCTATGCAGTTTGTCCGAAGCAAAATTCAAGTTatat
caatgaagtataagcccgaagggctagaagtcaatctccttggtaggatt
tgaagccaacaaatcctaccaaagttgcgcggccttgagcggctcgcctg
gtttttatacaaatgacagattgaaactaaaatttaccactaaatttgga
aaaaaaatatcaatcgtaaacaaaggaattgttagattcaatctgtcgtc
aaaaacgcgacgcattttttaaggcttcgctttttcttgcctgagaaagg
ttagagattaaactctagcccttcgggctttgaACTCAATGAGTTAtata
tttcatgttttattataagcatatgaaTTTGATAAACAGACTCGGTTATG
TTTAGCCATACTTTTTTATTAAGCTCAAGATTTTGACCAGCACTTACTGT
TTTTGATAAATGTTTAAATCGCCTTGCaaaaccagggggggggggcactt
aagGTAATTGACCTTCCGAACGTGCGGAAAcgaaaaatcagtaaaaattg
TTATTTGAAGTACCAAaaatttagaagaaaaaaaatgcatTGTACGGATG
TATTGTTAACCAacattttagccaaattttatctgcactgtaagggtagg
atttttggattttagaacAACATTTTTGTCCTAGCATACTGTTGTTTTTA
GATCGAATGTCCGAGTGATCAATGCAAGTGGCGTGGTGAGGGCCAaagtc
aattaaaaaaaaatggtcATTTTGGAATATGGCGCACCCAATTTTTTCCT
CAGATGCTGCTTATTCCCAAGTGTTTTCCCCTATGCAATAATTTCGATTA
AATTGGAGTAGCATTTTCATGCATGGAAAAGAAGACACCGCTGACTGCCA
AAGCAAAAAGTCTTAACATTGTGAAGGTGAAAATCTTGGAAAACAGGAAA
CGCCATTAACCATTAGCAAGACAAGTTAAATTATCAACCACCTCGCAGAG
GCTTAGCCAGGCAGCGataacttcaaattagcctatcatctcGGAATATC
AGCTAATTAGCCCAGAATAAGcaaattagcctatttcatacaGGCTAATT
AGCccataatgaagaaaaattagatttttgagccaaatacTAATAGTCGC
ATTCTATAAATCCTCAGATTAATTTCTAATCACTCAATTAATGTATATCC
CAAATATTATCCCTTAATCAGTTCCAGAATaggagatattcaatttttct
aacTGCGCATGCGCCGAGCATGCGCAGTATAAAAACTGCGACATTTTTcg
cggaaaatatttttttgcacaaggTACaagatcagaaaattagcctattA
TCAGTTAGTTAGCCTATCAGCTAGTTTTTTTAAAATACATCTTTTCTGGG
AGCTgaacacaaaagatttttaagtggagaatgttctttgaaacataaaa
gatttgtttttagtgaaaaaaagaTGCGACTATTAGTATTTGGctcaaaa
ttctaatttttcttcGTTGTGGGCTAATTAGCCtgtatgaaataggctaa
tttgCTTATTCTAGGCTAATTAGCTGATATTCCgagatgataggctaatt
tgaagttatCCCTGCCTGTTAGCCACGAATTTTCGGTTAGGGAGGGGGGC
gatatttggatttttttttgaccGTTTTGAtgggtaatttaaaaaaaaaa
attccacgtTAGCGCCACTTAAATTTTTGCtctaaaattgcttaaaacaG
TCTAAAATAGGCCTTGAAGAGGTCGCAATCCCACGAAGGCAGTTTTTATA
GCTTTTTTCATTTCGAATAAACTCCAGTCGTTAATGTAGTGCCACAAATT
TTTTTAACAGGACAGCAAAGTCTCTCAAAATCAAAGCCATTCTAATATAT
CTTAGAGGTAGGAATTTAAGCGCATATTAATTTTTGCacacaaagaaaga
aaaaataatattacAATATGCACGTACCGATCCAATTGATCTGTTTGATC
ATAATGCCCATATTCTAAGAGATACGCTAATTGCTCTTTGAAGAAAGTTC
CCAACCGATGGTGCAATTCACGCCACCATCTCTCTATTTTATTTGCAGTG
GAGGGTCCATATTTAACACATTCCTCTACAATCGTATCCAAATCGCCATG
GGTTCCAGCGAGCTCGTGTAAACGGCAATGAATCGCTGTCAGTGTGTCAG
TCTCGGTCCCTCTATCGACCCTGAGTGAGTATGGTAGCTCTaggtgaaaa
attcaaaatatataaatccTGAAAAGATTACAATAGAATCCCACAGGTAC
AAATAGAGTCAGTGCATTTTTGAGCGACAATTCTTGAgaatttaaatatt
tctttgaaaaacagagttttcaaaaacttttaaaattttgaattttgtct
TTGAAGTATGAGAAGTTTTGTCTGGAAAGTTATAGCTTCAGCCCCTGCAT
AGGAGAAAGCAGACATTGATCTAGAGATAAAAAACTATGCTAAAGTGAAC
TTTTTCGTTAGATAGCTGGTAATTGTAAATACTGAAACTAGCATCACGGA
AATTTACCTGATGCtgacaaaagtttaaaaaggctgtaacttttgatagc
atTTGAATTGGatagcgattttgtgctcgttgtaAAGATACCGTTGAGTG
GTATATCATTTGAGATCAAAGATTCAtccctttttgaaaataagaatTAT
AGAACAATTGTGCAAGAAGCTGATTTTTTCTTCTCATTTTGCGGAAAAGG
GTCTGTACCCCTCCCTTAAAAATACACCTCTCCCCTATTGGGTATCCCCT
TTTTTCAGAAATGTCTTTACCCCCTGGTAAAAATGACTTTTCATCAATCC
ATACtagtaaaagctcaaaatttacaCTATTTTAAAGATGGTGTTTTCAC
ACCATTTCATAAAATTCTAAGACTTTTAAAGACCCTACAAGTCACTTTCG
TCATTGTTTTGATAGACTTGAGTAAAAATTTGTAGCATTTGATTTACATT
TTCCTGTAAACCTCCTTCTAGCTCCATCATTTCCCTttattttacaaact
tttttttcattttttcaaggtCTCTACTATACTTCttcaattctatcaaa
agttacagcctcaTTTAACTTCACTGTAAGTTTTTTTGGGATACActttc
ttaaaatttcattgaatGATTTTACTTTGCATCTAGATTTGAAGTTTTCC
GGCTCTCATCTCAGTGAACAAGCCAAGCAAGCAGTACATAAAATTTGTTA
GTATCAAAACATGAATATAGATTGCCATAATGTAAAAGATACCTTTATTC
TCTATGAGGTATTCCAAGTAATGATATCCGGTAACCATTGGATCATTGTT
GCTTGTCCATATCTTTAAGAACATGATCTTTCCGCTGAACGTATCTTGAC
CACCATAAATACACAGAGGAAATGTCGATTTTTGGTACCCACATAGTTTG
TCATGGCCATCAAGAGAGAAACAATAGTTCGAGCCCTGAGTACAATTGAA
GGAGGAAGAAATATATAGTTTTGTAAAAAAGTTATCGACATAAAGCTTGA
GCAAAAGAAATTCCTCAACTTCAGCTATCATTTCATTGCATAGTGTTCAC
AACAGGCCTCTAATTCTGGTTAGTATTCAAAATCAATCAGGGGTgcaatc
aaaaataaagaaggGGTACAAACCCATCATCACACAGGAAAGCAAACAaa
ctaaaacataacttttaacaatgccaaaatattattttcaaaaatcaaca
aaatatcaATCACTATAATAGCAAAACTGGGTAGATTACTCACTGGAGAG
ATGAATCGCCTATTTCTTCTTCTCCTCTTAGGAATGCCAACACCTCCACG
ACTCTCTAAGCCTTCTGGGTCAAGTTCTTTCATTACCTCGTACACCATAT
CACGAGGGACTTTCAGCGAGTGTACTTCACGTATCTTTTGAGACATGGAT
CTATAACCCAATTTGCTTCCAGGACCTTCCAATTCATTCGAAACTGCTTC
AATGACATCATCTATATTGGCATTTGTATTAGTACATTTAATGGTGAAAT
GTTTCAGTCTGTCTCTCAAAGATGATAACGACCATGAATACTGACTAAAT
TCTTTCTTTACAACTACCAATATCTCAGCTCTTTTGTATGTGCGGGTCAC
CAATTCATCAAGTCTGCTTTTAAGCAGCAAATCATCTTTCCAATCTGCAT
TTCTTATTCTGTTCATTTCTAAATCTgaaacataaaaattgaaatgaagc
ATAAATCTTTAAATCTAAATCAGCACCCCTTTATTCCAGGTACATGTTTG
CGGACCAGCCAAACTTTTTCATGATCCTTAAGGCCTAATTGATTACAGta
tctaaaaaaattaatatgtACAACGGAGGAATCTTTTTGtggtaaaatat
gaaaaataaatgataaatATATATTCTGACACACTATATAAAATAATAAC
TATTTACATTAAAAACCACACAGTAAAAAAAACACATTCACTACTTTACT
GagtaaaaaataaattcttgtGACATAAATGTGTGAGAGAGAGACAAAAC
CTACCCAAAAAATAAGGGCATAGGCCACATGCCTAAATCATGAGGATCAC
AGCGCATAAAGTAAATGACTTAAATGTAAGTAACATTAACAGAGTCAACA
GAATGTCTTGTTGGGTGTAACTTTCTCAAAAACGACAGATTGGTTTGTTC
ATTGATATTGCAAAATCATAATTTAGAGGGGTAAATTGCACAACCCTATT
TTAGAAAGAAATGaataaacaaaagcaaaaaatgaaaaaaaaaaaaactt
atacaAAGTAAATATTAAAGTATTTACTTTGTGTAGTTTTAtagttatta
tttttatttttatttttttataatcaaaatctaaagtttttagggaaaca
aaattgaataaaacaaaataaattaactaagtaaacaaaatcaaaatttt
cttgtcataaaatgaaaaataagctACGCACTAGGACTCTCTTAGGaatg
aaaaacataaaaaaatttacacgATAAGTTCTAAAATTctaccaaaaatt
aaaaaccatAAGACATTAGAATGTGCTACTTTGAAGGTAACTCTACTTTT
CACATAATTGTATTTCTGAAGTTCTTATAGGCCTCCTATCTTTAAAAATG
CACCTCTGGATAAGTCAATTGAATCCATCTAAGCCCAATATGATTTCAAT
AAATCCCAAACTAATTGCAGAGTCCAAATATTCTTTCTAAAAAGTAACAT
AGTCATACTATAAagtcagaaaaacaaaacaaaacgaaaGAAGACCATAC
TTGCCGAGTCCAAATATTCTTTCTAAAAAGTAACATAGTCATAATATAAA
GtcagaaaaagaaaacgaaagaaGACTTGAGAATGAAAATAATTAAGTCA
CCCTCATCACCAGTTTCAAATGTAcaacaatctttaaaaaaatcattcct
TATCGAAACCAAAAAGTTTACAGAACTTATTAACTTTACATtcatgattt
tccaaaaaattggtaATTGCAACAATTGAACAATTACCTTCACAAAAAAA
TCTCTTATCACCATCTAATGCTTGTTTCGATGCAACTTCAGGGTCAGTTA
GATAATAACGAATGCCTTGAATATCAGTAACCATTAATGCCTCGTTTGAT
TTCACATaggaaaaatgcatgaaagttTCGGCTTTCATCATAACCTCATC
TTTATCGTCACCTTGGACGAAGTCGCCATTGTTGTTGATATGTTTGACAA
ATGTACCATCTCCCAAATACTCCTCTAATGTTGCAGCTACATCATTGACT
GTTGTAAAATAGGGTGTGGTATACTTGAAACATTCTCCAAACTCCCCTGG
AGCTTCAAAAGACATACGAGAAGCAAAATATTGAGCCAAAGAGTGCATTT
GGACTGATTTTCTAGGTATATTAGGATCACCAGCCACTGAAGGATTTTCC
CAAGGTTCATCATCAAGTGGGAATTTCAAAAGATAATACCCTCTTTCTAA
TCCACCTTTGATACATTTGGCTTTAAAAACCTTTTGGAAGCCACCCCTTG
AAAATTCACCCTTGTTGATAACAAACTTTGCAAATATTGGATCACACCAT
TCCATTTTCTCCACATTAAATTTTTCTAATGTCAACTCAAAAATCGCCTT
GTTGGATTCAATCAAATGACCAGCTTTCATGTATATTGAAGGATGGACAG
ATTTTGGAACTACAATACTCTTCATAATTGTTGATGGTTGTGTAGACTTC
TcaggtttcaaatatttcaaaggTCCTTCAGGCTCCACGGATCGTTCAGT
GTTCTTTGACTTGGATGTTGATGCCTTTTTGTTTACTTCATCTAAGTCAT
CTATCTGAAGAAGCCTGCAGTGAACAATTTTGCTTAAATCTGCCTTGTAA
CCTTCTCTAGCTGATGGGCCCCTCTCTCCCAACAATATGTCACACACTTT
GGTCTCTTCCTGGAAATGTTTTAAACAAGAGGTTTTAATATCTTGTAGGG
TATTTTCACCAGTCAAAAGAACAGACTCCAAGGTTCCCAAGCGCTCAAAT
TTCATGGCTTTCCCAGCTGGCGTTGCTGATAATAATTGGACATTGAAGTA
AACTGGCTCTCCTGGATTATCTTTTTTTGATCTGACAGCAGCAACTCGTT
TTTTAATCTCTGAAGTCCTACCTTTGTTGGCAGGCattttgttttacttt
attctaaaaaaaaataaggTTAAATTACCTAATTAAAATTCAGTAAAGTA
GAACaaatagttaaaaaaaaatgtccatagttttttaaaacatatttttg
atattttacttTCATGGAAACAAGATTGATGCAAGGATTGATGAAAAACT
TTTCCTTTTGTACTTTATATAGAATTCAATATACTAATTATTCAAACTTA
ATAATTACAACCAGTTGATCTTTTGAATGCTCCTTAAatgattttgttta
tttttcattgtttttcataCATTGAATATTCAAACAATAACATTTTCAGT
tacgaaaatttaaaaaaatcttttaatgaactaaatcttttcgatcataa
caaaaatttacaaaatatattAAAGTTTGTTTCAAAGAACTTGTTGGAAA
AGCTGGGAAAAGTGCACTTCTTCATTCACCTAATCATAAATGAGTTCCAA
ATTGCCACTGATATTGGAACCATCAAAACATATAATAATTATTTAACATA
AGATCAAGGtcttttttacatcaaaaatcTAAAGGATATCACTCTTGTCA
AATCCATCAAACGATCACCATCAACTAGAGATGGTCCTCTTTCCCCCAAC
AAAATGTCACATGATTTTTCAGTCTCTTGGAAATATTCAATTATAGAGAG
TTTTATATCAGCCACTGTATTTGTTCCAAAAAGGGGCAGTACCCTAATTG
CACCAAGTCGTGTAAACTTCATGCTTTTCCCGCTTGGGTGACTTGAAAGC
TGTTGTACTCTGATGTGTacatgattttgatttttcaatttctcagcAAA
TTTTTTTGATCCTTGATTTTCTTCATATTCTCTTTTGCAACtcatttttc
tttccaaatagAGAAATTTGTTGAATTAAAAAGTTGCAATGACATTAACA
TTTTGGCAATAATCAGTAATGCAGAGTTCGTCTATTTTCATTTGTTAggg
atttttataaaaatgtgttaaagaaatgaaacaaaatgctTAAAACTAGC
AATTTCATGTGTTTCATTCAGTTCATTTGAAGACAAAAGATATTCactta
tttttaaattctatgGGAGTTAATTGCACATTTTGaatgaagtttgaaaa
agtcatTGTTCAATCTGGGCAGAATAACAGAGAAGAGAATAAAATGAGAA
GGAGAATATCAAAGAAATAGATATATAGAGCCAGAAATGTAAATGTAAAA
TGAACCTAATTCTGCTGACAGACTGACAATGATGCTTAAAATCTTCTCAC
TACTGTTACTttacaaaaacaagaaaattaatAATGTGAAAAGCCTCATT
CAAATATAACACAAGCTCTATTCAAATTAAAACAATAGGagtaaaataga
ataaaataagATGTTTGACTTAACAAATCTCCAGGCTAGATAAATAcaag
ttttaaaaataaacaCTATGAACATAAGAATGACAGATAACAGACATCAG
CAGACAACAATTTCAATCTTTAAAATCAAGAACTTCGGAGTTAACCACAA
TTTCAAGCTCCCACATTTGTCTTGCAAAAATATGATGATCAGTATTAAGT
TCAAATTGAAATGCCAAAGTATGGTTCatcatttctttttcttcatcaga
aATTTCTTCTCTAATCAATAAGCACATGATTTTATCTCTTTTTTTGTCAT
CCAAATTAAAATACATTGGGCGATAGCATTTTCCCTTGAAAGTGTCTTTG
TTTGCATCAAACCATTTTAACGCTACCAAACAATCATCAATCCTATTGTA
TGCTGAAAAGGACAATATCAAGAAAGACATTATCTTCCAGCAAGTTAGAT
CAGTACTGTAGGCAAGAACCAAATTTTTCTAGAAAACTTCTTAGAACATT
GAAATAAGAAAgtgtattttatatttgttttgaAGTTATTAGCAGACATa
ccaaataaaaatgaataaaaaagaaatgcagttttaaaaatttaaaaatt
caaaatttagctGACCTTGTTTAATATTAGCTGACATCGACACTGATTTT
GGAACTTTGGAAGCCATACTTGTttgaattttgtaattttatttatttgt
ttttaattgATCTCTAGAGcaggaggggggggggtcaatagtaaaatctc
agacttCATGACGTTTACTACCGTAGTGGTatagcaaaaaaatgcaaata
aaTTTTTACCCAGATCAGTCCAGGCGTAcggtagttaatcgatataatcg
ataatcttgattatttatcgattactcaagatcatcgattatatcgatta
actacgcctggatCAGTACAAATACTAAAATaggtaggctacgtcatatc
tgcCTTCGCTCCAAGCTGTCAAACTCCTCCTCTTCGAGTAAGAGTAAgac
ctaaaagcctggagctgtctattgtgcaGACTATAAAATAGGTGGTACCC
TGAAGTAAAATTTGATCAGAAGATATTCCAATTTTTAGATACATGAAAAA
AATACTGAGTCAGCAAAAAGTTATCGATAATTCAcaacattaaaatcaaa
atatcttgTAATCCAGTCATCAAAACTTAACAAACTATaccctttttttt
taaatacttttatGTGTGTTACCAGtcgtttcttttttttctttccacac
CATGTACAGGAAAAAAGCTAGTAAATAATTATAGTATGTAAGAATGGTAG
CAAAATTCAGATTCCAACAACGAACTTATCACGAGCACCACTAACCAAAG
CCATCCAAGCAGGACTGAATTTTCAAACCACgtgaataaaactttttttt
aattttacaagGTAACTACCCTGTAACTACGGTCAATTTTATTGTCTAAG
AATGTGTAAAATACTGACCTAAAAAACGGAATCGATTACTCAAATTACTC
CTTTTATAGGGCTTTGAAACATAAACAAttgaaattacatcaaaaattAG
TGCAAATAATATGTCATTTTAAACTCGATGTCAAGAAAGACCTTTTATAA
TCTGAATCTGATCCAAATTGTTTGACTTTTTACCTTTTCTAAATTACAGA
CCAAAGATTTCTCCACCATAACGTAATGTTTCCTCAAAAACCAATCAAAA
CCCATCGATTTTTTTTGCGCGCAAATGTGATGTTAGTTACGTAAttaatg
aaaaggtctattagtcATGTAAATAAACGGTTGCGAGCCGCGCGTGGTTG
AGAGATTGAGCTGGATTTTTCGCACCTCACTCTCTCCTTTGGGGATTTAC
ACACACCTCTAGAAAAATTCTCTGTTATTCGACTTGATGAAGTAAAGTGT
GAAAGTCATCACTCCCGCAGCTGTGGACTCAATTTTTTCATTGTAAATAt
gtgaataaaagaaaaagcgatttcatcgatttttggtGGCTGACACTACT
ACGCCGCTAAACGtttcttttttaatataagaataaactaccttatcggc
cgtTTTTACACCGGGCCTTATatgcgttatttttgggctcgtgcagttat
aagggccggcgttaaaaagggccggcgtaaaaagggccaagattttgcaa
ttttaacctaaaagcggcgttcCGAAGGTNaaaaagggccaagattttgc
aattttaacctaaaagcggcgttccgaaggtttcaaaaaattttgatgct
CTTACAAAAATACGTTTAGGGGGAGGGAGTGGAGTACATAGTGGAGTCAT
GGACTCAGCGTCGGAATGACGTGAGAAAAATCGGTATGTGAGTGGTATGG
TCcctcaatgatttttttaaattcatttcgaatttaatttgaattgaaat
agaaataaaaaatttaatgtcCTTCTCGTCCACGTCTTTGCCCTTATTGT
CCTACTCGGCcatgaagtgattttttttttcaattcattttgaatttaat
ttgagattgaaataaaaaagattaatgtccttctcgtccacgtctttgcc
cttattgtccttctcggccatgaagtgattttttttttcaattcattttg
aatttaatttgagattgaaataaaaaggtTAATGTCCTTCTCGGCCATTT
AATGGCCTTCTCGTCCACGTCTTTGCCCTTATTGTCCTTCTCGGCCATGA
agcgattttttttttcaattcattttgaattcaatttgagattgaaataa
aaaaggttaATGTCCTTCTCGTCCACGTCTTTGCCCTTATTGTCCTTCTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaat
tgaaatgaaattaaaatgaaattgaaatgaaattaaaatgaaattgaaat
gaaattaaaatgaaattaaaatgaaattgaaatgaatttaaaatgaaatt
gaaattgaaatgaaattaaaatgaaattgaaatgaaattgaaatgaaaat
gaaatgaaaatgaaatgaaattaaaatgaaattgaaatgaaattgaaatg
aaattgaattgaaattgaaattaaaatgaaattaaattaaaatgaaatga
aattaaaatgaaatcgaaatgaatttaaaatgaaattgaaattaaattga
aatgaaaatgaaatgaaattgaaatgaaattgaaatgaaaatgaaatgaa
aatgaaatgaaattaaaatgaaatcgaaatgaatttaaaatgaaattgaa
attaaattgaaatgaaaatgaaatgaaattgaaatgaaattgaaatgaaa
ttgaaatgaaattgaaatgaaattgaaatgaaaatgaaattaaattgaat
tgaaattgaaattaaaatgaaattaaattaaaatgaaattgaaatgaaat
tgaaatgaaattgaaatgaaattgaaatgaaaatgaaatgaaattgaaat
gaaattgaaatgaaattgaaatgaaatgaaaatgaaatgaaattaaaatg
aaattaaattgaaatgaaattgaaatgaaattaaaatgaaattgaaatga
atttaaaatgaatttaaaatgaaattgaaatgaaatcaaaatgaaatgaa
atgaaagtcaaaatgaaatgaaattaaaatgaaacgaaattgaaatgaat
taaaatgaaattgaaatgaaatcaaaatgaaatgaaatgaaagTCAAAAT
GAAATGAAATTAAAATGAAACGAAATTGAAATGAAttaaaatgaaagtaa
aattaaatttaattgagcttttttattgtttttcgatCAGCTAATTCATT
ATATCGCTAATGTCTCTGTAGGCCACCATAGACATCACTTCAGGCTCACT
TTTCGATTTCTTCTTTAAAACTTTATCATCTTTTTTGCCATCTACAGTCT
TCcgtttcaaatcttttttagtCCAGCCCTCTTTATTACCACCAGAACTT
GTATCGCCAGCATCTTCTTGAGCCTCGTTTTGGAGTCCAAACAACACCTG
GTTGTATTTCTTTAAACCAACTTGGTCTTTCAGTTTCTTGATCTCACCCA
AAGGCACATCACGCAATTGTTCTCTTAAGTCTTCTGCTTCCTCATCGTCA
CTTTGTGGTTGTTCTGATTCATCATAACTTTGTTCTTCATTATCAGAATA
TTCTGAATCACTCATTTTTTTAATGTTCTgctaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006883-exon-sc0000072-1491911889:336744..337328 | TCONS_00006883-exon-sc0000072-1491911889:336744..337328 | Clytia hemisphaerica | exon |
| TCONS_00006883-exon-sc0000072-1510915933:336744..337328 | TCONS_00006883-exon-sc0000072-1510915933:336744..337328 | Clytia hemisphaerica | exon |
| TCONS_00006883-exon-sc0000072-1575043694:336744..337328 | TCONS_00006883-exon-sc0000072-1575043694:336744..337328 | Clytia hemisphaerica | exon |
| TCONS_00006883-exon-sc0000072-1491911889:352927..353280 | TCONS_00006883-exon-sc0000072-1491911889:352927..353280 | Clytia hemisphaerica | exon |
| TCONS_00006883-exon-sc0000072-1510915933:352927..353280 | TCONS_00006883-exon-sc0000072-1510915933:352927..353280 | Clytia hemisphaerica | exon |
| TCONS_00006883-exon-sc0000072-1575043694:352927..353280 | TCONS_00006883-exon-sc0000072-1575043694:352927..353280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:336744..353280 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009292 | RRP36 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000469 | cleavage involved in rRNA processing |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000469 |
cleavage involved in rRNA processing |
Blast
BLAST of TCONS_00006883 vs. Swiss-Prot (Human)
Match: RRP36 (Ribosomal RNA processing protein 36 homolog OS=Homo sapiens GN=RRP36 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.515e-23 Identity = 60/134 (44.78%), Postives = 92/134 (68.66%), Query Frame = -2
Query: 153 RHVVKNMKRSTRDPRFNDLSGAYNEELFQKSYAFVDDIKKNEYESVKKQLRXXXXXXXXXXXXXXXXKMDTESKVKAELAKRREMSKQRKKEMAEQTEGGKKPFYLKNSDKKKIELAEKYKELKASGKLDKYMS 554
R VV K+ RDPRF+DLSG YN E+F K+Y F++DI+ E E VKKQL+K + EE EKL +L Q+M+ + + E +++E+ K+E Q + G +P++LK S+++++ LAEK+KELK S KL+ ++S
Sbjct: 107 RQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKELVKKQLKKHLSGEEHEKLQQLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELKRSKKLENFLS 240
The following BLAST results are available for this feature:
|
