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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006520 ID=TCONS_00006520|Name=TCONS_00006520|organism=Clytia hemisphaerica|type=transcript|length=1214bp
AAGAATAGTCAAGTGTGGGATGGGTAATCTTTCTCTCGAATTTCCCATAA
GGTATTTTACTATGATCCTATATTATTaagaattaaatttttcattttga
taatCTACACAATGGCACGGAAAATTAGGACGGAGGTATAAATCCTGACG
CGTCTCTGATATAAGACACTTTATTCACATCAGTTTTGTACGCTTCAGAC
CTGTTTTAACGGAATTTAGGCagggaaaatttgaaattttacatacGTCA
GAAATAGgtaacATGAACTGTGTGTTGGTCTTTTTGGTATTATTCCTGGC
AAATAATGTTTACTCCGCCTCCTTGACACGTGAGGAAGATGCTCTGGTAA
CTAAGCTACTGGACACGATCGAAAAACGGGATGCAGTACCTCGACTTGGT
AAACGAGAAGTACCTAGGCTTGGAAGAGAAATTGAGGAGGTACCTAGGCT
TGGAAGAGAGATCGAATTGGTACCTAGACTAGGACGAGAAGCTGAAGAAG
TACCTAGGCTTGGTCGAGAAGTTGAATTGGTACCCAGGCTTGGTCGAGAA
GTCGAATTGGTACCCAGGCTTGGTCGAGAAGTCGAAGTTCCGAGACTTGG
GAGAGAGGTTCCCAGACTAGGACGTGAGATGGAAGAAGTGCCAAGGCTTG
GTCGTGAAATTGACGAAGTTCCAAGATTGGGTAGAGAAGTACCTAGGCTG
GGAAGAGAACTCGAAGTTCCCAGGTTAGGCCGAGAAGTACCACGGCTTGG
AAAGCGTGAAATTCCAAGATTAGGAAAACGAGAAGTACCTAGACTGGGAC
GTGAAGCATCAACGTATGACTTGAAACAATTGTACAATCAATTAAAACGT
GAAGTCTCAAATGACATGATAGAAGCTGAAATTAAAGAAGAAAAGCGCGT
TCTGAAAGCGTTCAATCTTGGCACGCGTGGTCTAATATTGAGAAGAATCG
GAGATAAATTAAATAAAGATGGATTTTCTGACCAAAAACGGGGTATGAAT
GAAAAGGAAAGTAGCAGACCATTCTTGCATGTGAAACGCACAAACTTACT
CTCGTTGATCGAGAAGCTTACTTCAGAAGAATAATATGTTAAAGTAGTAT
TTAATAATTCTAATTTTAATGAATCATTAtcattatataaaaatttatat
CGTTAAAATAAATAGTTGGTAGATTATAGAGTGGCTTCTAAAATATCTTA
AATAACACCTATAC Run BLAST on NCBI transcript from alignment at sc0000067:489861..492474- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006520 ID=TCONS_00006520|Name=TCONS_00006520|organism=Clytia hemisphaerica|type=transcript|length=2614bp|location=Sequence derived from alignment at sc0000067:489861..492474- (Clytia hemisphaerica)
AAGAATAGTCAAGTGTGGGATGGGTAATCTTTCTCTCGAATTTCCCATAA
GGTATTTTACTATGATCCTATATTATTAAGAATTAAATTTTTCATTTTGA
TAATCTACACAATGGCACGGAAAATTAGGACGGAGGTATAAATCCTGACG
CGTCTCTGATATAAGACACTTTATTCACATCAGTTTTGTACGCTTCAGAC
CTGTTTTAACGGAATTTAGGCAGGGAAAATTTGAAATTTTACATACGTCA
GAAATAGGTAAGATTTTATCTGTTTTGATTTGATTTTAATAGATTTTTCT
TCTATATAGAAGGAGGTCCAAAAAAATTGATGTAGCCAAAACACCAAATA
TTTTCAAATGTTGAAAGCTTATTTATTGAAAAATTATTCAAAAATTCTCA
TCTTTACTCCGGATATTATACCGTCGATTGTCAGTGTATCATAGACATTT
TTGTACTGCATATCTTAGAATTTAAATTTGTTTTTTTTTGTACGAAATTT
GCCACATTTTGACCTTATTTTTTCTAATTTTCTACTTCGTGTTCATTATT
TTTCCAAAAAGAATACTTTTAAACATCTGTCAATTCCAGGTATATATTTA
CTGAGAAAAAAACAAAAAACTTGTTTTAGGCAGAGCTTTAGATACTTCCA
ATAAATAAACTCTGAAAGGTAAATTTTGAGATATTTAAAAAAGGAGGAAG
AAAAAAAAGATCGATTTCGAATTTTTTGGAAGAACTAATATCTCTCACTG
CATGTAGCGATTATCTTTTACAATATGAGTATTTTAGTACTTCACTTTTA
GATAGATTAAGTCTTAATTAATGTCTGAAGGTTCCTGCTAATGATTAATA
GAGCTGGTTATTTTTTGGTTTAGGTATAATAGATTTTGAAGAGTGTTTAG
TTTAAGCTAGAAGCGCAGGATATAAGGGGTAGGGTCTAGAACTACATTAT
TCGTGCAAAGTTCGTCGGGGAAAAAAAGACCAATTTTGTTTTTGCCGACG
ATTATTTTTAACTGATGATTAATTTTTTCCGGCCAACAAATTTCCCGAAT
GATTTCAGTTACTTTGGTAATTTTTGTAGGGTAATCCAAATCTGTTTGGA
GATGAGTGCTAGCTGGTTCAAAATTGAAGATATTGACTGCGTCATTATAG
TTGATCTTGGAATTGTTTATTTAGCTCCATTTAAACCCAACCTCCCTTTT
GTTGAGGCCTCCACCCTTTTCATAACTTCTCCTCCCCTGCCCGTCCAAGT
AAACATCCTAAACGTGAAAATAAGTGGACAAGAAAAATATTTGTTTGTGA
AATTTATCAAAATCTGTTTTCTTATTCATGAAAACGCCTCCTAAAGGGCT
GAATATTTGGATTTTAAGTTAATTTTTAGAGCTTATAAAAAGCTATAGTC
ATTCTTTTTTGTATTAGTGTAAGCTTTAGATTTTTCTCTCCTGCCCTTAT
GGAAAGAAGTTGGTTGTTGAAAATTATTCATGTATTTTAAACTAGTCTTA
TAATGGCGGAGATATTCTGCATAGCGATGAACAATATTCTATATGGTGGT
GGTGATTTAATGATTCAGCCTTATCAGCCTCGTTTTTACGACTTTGGCAA
ATGTTATGTACACTGAATAAATTTCTATCAATCGGATTTCTAATCTTTTT
TTTTCAGGTAACATGAACTGTGTGTTGGTCTTTTTGGTATTATTCCTGGC
AAATAATGTTTACTCCGCCTCCTTGACACGTGAGGAAGATGCTCTGGTAA
CTAAGCTACTGGACACGATCGAAAAACGGGATGCAGTACCTCGACTTGGT
AAACGAGAAGTACCTAGGCTTGGAAGAGAAATTGAGGAGGTACCTAGGCT
TGGAAGAGAGATCGAATTGGTACCTAGACTAGGACGAGAAGCTGAAGAAG
TACCTAGGCTTGGTCGAGAAGTTGAATTGGTACCCAGGCTTGGTCGAGAA
GTCGAATTGGTACCCAGGCTTGGTCGAGAAGTCGAAGTTCCGAGACTTGG
GAGAGAGGTTCCCAGACTAGGACGTGAGATGGAAGAAGTGCCAAGGCTTG
GTCGTGAAATTGACGAAGTTCCAAGATTGGGTAGAGAAGTACCTAGGCTG
GGAAGAGAACTCGAAGTTCCCAGGTTAGGCCGAGAAGTACCACGGCTTGG
AAAGCGTGAAATTCCAAGATTAGGAAAACGAGAAGTACCTAGACTGGGAC
GTGAAGCATCAACGTATGACTTGAAACAATTGTACAATCAATTAAAACGT
GAAGTCTCAAATGACATGATAGAAGCTGAAATTAAAGAAGAAAAGCGCGT
TCTGAAAGCGTTCAATCTTGGCACGCGTGGTCTAATATTGAGAAGAATCG
GAGATAAATTAAATAAAGATGGATTTTCTGACCAAAAACGGGGTATGAAT
GAAAAGGAAAGTAGCAGACCATTCTTGCATGTGAAACGCACAAACTTACT
CTCGTTGATCGAGAAGCTTACTTCAGAAGAATAATATGTTAAAGTAGTAT
TTAATAATTCTAATTTTAATGAATCATTATCATTATATAAAAATTTATAT
CGTTAAAATAAATAGTTGGTAGATTATAGAGTGGCTTCTAAAATATCTTA
AATAACACCTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006520-exon-sc0000067-1575043694:492218..492474 | TCONS_00006520-exon-sc0000067-1575043694:492218..492474 | Clytia hemisphaerica | exon |
| TCONS_00006520-exon-sc0000067-1575043694:489861..490817 | TCONS_00006520-exon-sc0000067-1575043694:489861..490817 | Clytia hemisphaerica | exon |
| TCONS_00006520-exon-sc0000067-1510915933:492218..492474 | TCONS_00006520-exon-sc0000067-1510915933:492218..492474 | Clytia hemisphaerica | exon |
| TCONS_00006520-exon-sc0000067-1510915933:489861..490817 | TCONS_00006520-exon-sc0000067-1510915933:489861..490817 | Clytia hemisphaerica | exon |
| TCONS_00006520-exon-sc0000067-1491911889:492218..492474 | TCONS_00006520-exon-sc0000067-1491911889:492218..492474 | Clytia hemisphaerica | exon |
| TCONS_00006520-exon-sc0000067-1491911889:489861..490817 | TCONS_00006520-exon-sc0000067-1491911889:489861..490817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:489861..492474 - |
Blast
The following BLAST results are available for this feature:
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