TCONS_00006089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006089
Unique NameTCONS_00006089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006089 ID=TCONS_00006089|Name=TCONS_00006089|organism=Clytia hemisphaerica|type=transcript|length=2168bp
CAACCTTTCTTGAGTGCTATTAGAACCACAAAAAAGCGAACAAaaagact
gggttcgagtttgggGTAAAATTCTTCTTTCCGAAATGGCTCAAATTGCA
ATCGATCAAACCACCCACTCATAAAAGCCACTTAATGTCACTTGATAGAC
TATTATAAACCTAATTACTTTTGAGCCATTTCCGATATAAAATCTTGGAA
GAAATGTGTTTCAGCATCATACAAATTTTCTTAGTTGATTACCTTaatat
tagaaaaaaattctccaaagactaaaaaatgacattgacaattcttataa
aatgtatattctcaacttcagttgagctagaatctcagaatgtttgtttg
tgagtttgtttgtccacaaactttggggcagcgtagagagcggaataatt
ggtttacggagctgaaatttggcacacaccTTCCTGATGTTAAAACTTAG
GTTTTGCGCTTATTTAACGTCGTAAATTTCTCATACATATTCTCAGTCAG
TCAATTTAGCAATATTGGTGAATTCGGAATAGCTGATAGTCCTATTCTCA
TCATGATCCAAAAGACCAAACAATTTCTCTAAGATAGCCTTCGTGACTGG
TATACCACAAGCCTGTAATCCTTCACCAATGCTCAACATATCCAAGGCAC
CTGTTTTCTTTTTATCCCACATATTGAACAGATCAAGCATCCGCAGACGT
TGCGTAAACAAATAATTCCGAATCTCGGTAAAAATCTCTTCACGAATAAC
CACATCTTCATTCTTTAAAAACAGTTTACTGTGTAATAAAATAGGTACAC
CATAAGTCAACAATATGTCTTTACTGACTTTCTGTAAATGGTTTATAGCT
CTCATACAGACTGTATCTGGTGAGATTTGCTTCATATGCAACTCTTGTAG
ATTGCCAGATTTGATAACACCAACTAAAATATATTGCATTCCAACAGCAG
TTATCATGTTTCCACTAATATCTAATTTCCTCAAAGTGTTATTGACAGAT
AACCCATATCCTAATCGTTCAGCTCCTTGATTTGTTATTCGGTTATCTCT
TAAGTTTAGTGACTCTAATGTTTGATTTACCTCCAACATACGTGTTATCT
CTTTAATACCATCATCAGAGATACCATTGAAAGATAGATTCAAAGTCAAT
AACGAATTGTTCTTAATAAGGCCCAGTACTAATGAAGAACAACCAATTTT
CCGAATATGATTCCAGCTCAAATCTAATGTCTCCAGAATAGTATTCTCAA
ACAACAGATCACGTAATATCCTTTGTTTACCCTCAATCATATTGGAACTT
AAATCTAAATTCTTCAATATTGCATTATCCTTGGTGAATGTCAACAAACT
GTTGACGTCTTTATCATCGAGCCTGCAATTGGCTAAACATACTGAAACCA
GATATGTGTCCTCCAGGCGGTTGAATATTTTCGCGCTGACTAGATTTATG
TCAATACCAGATAAATCCAACTTCTTGATATTTACTGAATCCTGTAGTAA
AACTGATAATGATATTAACGCATTCAATTTCAAATTGCAATATGATAAAT
TTATATCAACCAAGAAATCAGCTTCTTTTAAAACagtgaaaattaaaacc
caTTGTTTTTGTGTTAATCTTTTGTTTGATATCTCCAATTTTTCTTGTGg
tgagaatttcaaaaatcttgatatTTCATCATCTAATGGTATACTTAGTT
TGAAACTTCCCAGAACGTATTTATCATGAATTTTTGTTGATAACGACTTC
TCTCGAAATGTTTTGTCATCCTCGTCTACAAGTCTGTGGATTCTCTGCTT
CCGACCAATGCTGATGGTATTTGAaggaaaattatccattgtgtCAAATA
ATTCTTCAGTGGCGCTGCTTCTTAGAGAAGATAATGTCAagtccattttt
caaaacataagAGCAAAGatcttttcatcaaatttttcgtgAGGTTCTTG
AATCTTTCAGGTCTGTCCATGTATATATTCAAtttaaatttcaatcaaaa
tttatatTCTTCGGGTACTTATATAGAATATTTTCCTTGTCTATATAAAc
ttaattattttctttaattatTACTTAAATTTACAATGTCTCTTATCCAA
GTTTTGTGCCCTTTTCATATCTTTAtaacatatttcaaaatttcattaac
aTAAGAGTAATGTTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00006089-protein

>TCONS_00006089-protein ID=TCONS_00006089-protein|Name=TCONS_00006089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MDLTLSSLRSSATEELFDTMDNFPSNTISIGRKQRIHRLVDEDDKTFREK
SLSTKIHDKYVLGSFKLSIPLDDEISRFLKFSPQEKLEISNKRLTQKQWV
LIFTVLKEADFLVDINLSYCNLKLNALISLSVLLQDSVNIKKLDLSGIDI
NLVSAKIFNRLEDTYLVSVCLANCRLDDKDVNSLLTFTKDNAILKNLDLS
SNMIEGKQRILRDLLFENTILETLDLSWNHIRKIGCSSLVLGLIKNNSLL
TLNLSFNGISDDGIKEITRMLEVNQTLESLNLRDNRITNQGAERLGYGLS
VNNTLRKLDISGNMITAVGMQYILVGVIKSGNLQELHMKQISPDTVCMRA
INHLQKVSKDILLTYGVPILLHSKLFLKNEDVVIREEIFTEIRNYLFTQR
LRMLDLFNMWDKKKTGALDMLSIGEGLQACGIPVTKAILEKLFGLLDHDE
NRTISYSEFTNIAKLTD
Run BLAST on NCBI

transcript from alignment at sc0000062:54910..57077

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006089 ID=TCONS_00006089|Name=TCONS_00006089|organism=Clytia hemisphaerica|type=transcript|length=2168bp|location=Sequence derived from alignment at sc0000062:54910..57077 (Clytia hemisphaerica)
TAAAAACATTACTCTTAtgttaatgaaattttgaaatatgttaTAAAGAT
ATGAAAAGGGCACAAAACTTGGATAAGAGACATTGTAAATTTAAGTAata
attaaagaaaataattaagTTTATATAGACAAGGAAAATATTCTATATAA
GTACCCGAAGAatataaattttgattgaaatttaaaTTGAATATATACAT
GGACAGACCTGAAAGATTCAAGAACCTcacgaaaaatttgatgaaaagat
CTTTGCTcttatgttttgaaaaatggactTGACATTATCTTCTCTAAGAA
GCAGCGCCACTGAAGAATTATTTGacacaatggataattttcctTCAAAT
ACCATCAGCATTGGTCGGAAGCAGAGAATCCACAGACTTGTAGACGAGGA
TGACAAAACATTTCGAGAGAAGTCGTTATCAACAAAAATTCATGATAAAT
ACGTTCTGGGAAGTTTCAAACTAAGTATACCATTAGATGATGAAatatca
agatttttgaaattctcacCACAAGAAAAATTGGAGATATCAAACAAAAG
ATTAACACAAAAACAAtgggttttaattttcactGTTTTAAAAGAAGCTG
ATTTCTTGGTTGATATAAATTTATCATATTGCAATTTGAAATTGAATGCG
TTAATATCATTATCAGTTTTACTACAGGATTCAGTAAATATCAAGAAGTT
GGATTTATCTGGTATTGACATAAATCTAGTCAGCGCGAAAATATTCAACC
GCCTGGAGGACACATATCTGGTTTCAGTATGTTTAGCCAATTGCAGGCTC
GATGATAAAGACGTCAACAGTTTGTTGACATTCACCAAGGATAATGCAAT
ATTGAAGAATTTAGATTTAAGTTCCAATATGATTGAGGGTAAACAAAGGA
TATTACGTGATCTGTTGTTTGAGAATACTATTCTGGAGACATTAGATTTG
AGCTGGAATCATATTCGGAAAATTGGTTGTTCTTCATTAGTACTGGGCCT
TATTAAGAACAATTCGTTATTGACTTTGAATCTATCTTTCAATGGTATCT
CTGATGATGGTATTAAAGAGATAACACGTATGTTGGAGGTAAATCAAACA
TTAGAGTCACTAAACTTAAGAGATAACCGAATAACAAATCAAGGAGCTGA
ACGATTAGGATATGGGTTATCTGTCAATAACACTTTGAGGAAATTAGATA
TTAGTGGAAACATGATAACTGCTGTTGGAATGCAATATATTTTAGTTGGT
GTTATCAAATCTGGCAATCTACAAGAGTTGCATATGAAGCAAATCTCACC
AGATACAGTCTGTATGAGAGCTATAAACCATTTACAGAAAGTCAGTAAAG
ACATATTGTTGACTTATGGTGTACCTATTTTATTACACAGTAAACTGTTT
TTAAAGAATGAAGATGTGGTTATTCGTGAAGAGATTTTTACCGAGATTCG
GAATTATTTGTTTACGCAACGTCTGCGGATGCTTGATCTGTTCAATATGT
GGGATAAAAAGAAAACAGGTGCCTTGGATATGTTGAGCATTGGTGAAGGA
TTACAGGCTTGTGGTATACCAGTCACGAAGGCTATCTTAGAGAAATTGTT
TGGTCTTTTGGATCATGATGAGAATAGGACTATCAGCTATTCCGAATTCA
CCAATATTGCTAAATTGACTGACTGAGAATATGTATGAGAAATTTACGAC
GTTAAATAAGCGCAAAACCTAAGTTTTAACATCAGGAAggtgtgtgccaa
atttcagctccgtaaaccaattattccgctctctacgctgccccaaagtt
tgtggacaaacaaactcacaaacaaacattctgagattctagctcaactg
aagttgagaatatacattttataagaattgtcaatgtcattttttagtct
ttggagaatttttttctaatattAAGGTAATCAACTAAGAAAATTTGTAT
GATGCTGAAACACATTTCTTCCAAGATTTTATATCGGAAATGGCTCAAAA
GTAATTAGGTTTATAATAGTCTATCAAGTGACATTAAGTGGCTTTTATGA
GTGGGTGGTTTGATCGATTGCAATTTGAGCCATTTCGGAAAGAAGAATTT
TACcccaaactcgaacccagtctttTTGTTCGCTTTTTTGTGGTTCTAAT
AGCACTCAAGAAAGGTTG

Coding sequence (CDS) from alignment at sc0000062:54910..57077

>TCONS_00006089 ID=TCONS_00006089|Name=TCONS_00006089|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000062:54910..57077 (Clytia hemisphaerica)
atggactTGACATTATCTTCTCTAAGAAGCAGCGCCACTGAAGAATTATT
TGacacaatggataattttcctTCAAATACCATCAGCATTGGTCGGAAGC
AGAGAATCCACAGACTTGTAGACGAGGATGACAAAACATTTCGAGAGAAG
TCGTTATCAACAAAAATTCATGATAAATACGTTCTGGGAAGTTTCAAACT
AAGTATACCATTAGATGATGAAatatcaagatttttgaaattctcacCAC
AAGAAAAATTGGAGATATCAAACAAAAGATTAACACAAAAACAAtgggtt
ttaattttcactGTTTTAAAAGAAGCTGATTTCTTGGTTGATATAAATTT
ATCATATTGCAATTTGAAATTGAATGCGTTAATATCATTATCAGTTTTAC
TACAGGATTCAGTAAATATCAAGAAGTTGGATTTATCTGGTATTGACATA
AATCTAGTCAGCGCGAAAATATTCAACCGCCTGGAGGACACATATCTGGT
TTCAGTATGTTTAGCCAATTGCAGGCTCGATGATAAAGACGTCAACAGTT
TGTTGACATTCACCAAGGATAATGCAATATTGAAGAATTTAGATTTAAGT
TCCAATATGATTGAGGGTAAACAAAGGATATTACGTGATCTGTTGTTTGA
GAATACTATTCTGGAGACATTAGATTTGAGCTGGAATCATATTCGGAAAA
TTGGTTGTTCTTCATTAGTACTGGGCCTTATTAAGAACAATTCGTTATTG
ACTTTGAATCTATCTTTCAATGGTATCTCTGATGATGGTATTAAAGAGAT
AACACGTATGTTGGAGGTAAATCAAACATTAGAGTCACTAAACTTAAGAG
ATAACCGAATAACAAATCAAGGAGCTGAACGATTAGGATATGGGTTATCT
GTCAATAACACTTTGAGGAAATTAGATATTAGTGGAAACATGATAACTGC
TGTTGGAATGCAATATATTTTAGTTGGTGTTATCAAATCTGGCAATCTAC
AAGAGTTGCATATGAAGCAAATCTCACCAGATACAGTCTGTATGAGAGCT
ATAAACCATTTACAGAAAGTCAGTAAAGACATATTGTTGACTTATGGTGT
ACCTATTTTATTACACAGTAAACTGTTTTTAAAGAATGAAGATGTGGTTA
TTCGTGAAGAGATTTTTACCGAGATTCGGAATTATTTGTTTACGCAACGT
CTGCGGATGCTTGATCTGTTCAATATGTGGGATAAAAAGAAAACAGGTGC
CTTGGATATGTTGAGCATTGGTGAAGGATTACAGGCTTGTGGTATACCAG
TCACGAAGGCTATCTTAGAGAAATTGTTTGGTCTTTTGGATCATGATGAG
AATAGGACTATCAGCTATTCCGAATTCACCAATATTGCTAAATTGACTGA
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003464XLOC_003464Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006089-proteinTCONS_00006089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006089-exon-sc0000062-1491911889:54910..57077TCONS_00006089-exon-sc0000062-1491911889:54910..57077Clytia hemisphaericaexon
TCONS_00006089-exon-sc0000062-1510915933:54910..57077TCONS_00006089-exon-sc0000062-1510915933:54910..57077Clytia hemisphaericaexon
TCONS_00006089-exon-sc0000062-1575043694:54910..57077TCONS_00006089-exon-sc0000062-1575043694:54910..57077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:54910..57077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199211	0.194263	0.43061	0.441345	9.42709	6.13708	11.339	10.4411	6.11968	4.83924	5.54109	5.15015	0.325201	0.538027	0.431908	0.47454	0.258309	0.376235	0.731556	0.261889	0.560317	0.256221	0.456824	0.547466	0.894426	1.0412	3.72489	1.74913	0.0402017	0.0819183
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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