TCONS_00006089-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006089-protein
Unique NameTCONS_00006089-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006089-protein ID=TCONS_00006089-protein|Name=TCONS_00006089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MDLTLSSLRSSATEELFDTMDNFPSNTISIGRKQRIHRLVDEDDKTFREK
SLSTKIHDKYVLGSFKLSIPLDDEISRFLKFSPQEKLEISNKRLTQKQWV
LIFTVLKEADFLVDINLSYCNLKLNALISLSVLLQDSVNIKKLDLSGIDI
NLVSAKIFNRLEDTYLVSVCLANCRLDDKDVNSLLTFTKDNAILKNLDLS
SNMIEGKQRILRDLLFENTILETLDLSWNHIRKIGCSSLVLGLIKNNSLL
TLNLSFNGISDDGIKEITRMLEVNQTLESLNLRDNRITNQGAERLGYGLS
VNNTLRKLDISGNMITAVGMQYILVGVIKSGNLQELHMKQISPDTVCMRA
INHLQKVSKDILLTYGVPILLHSKLFLKNEDVVIREEIFTEIRNYLFTQR
LRMLDLFNMWDKKKTGALDMLSIGEGLQACGIPVTKAILEKLFGLLDHDE
NRTISYSEFTNIAKLTD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003464XLOC_003464Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006089TCONS_00006089Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 218..245
e-value: 5.7
score: 11.8
coord: 246..273
e-value: 0.4
score: 19.7
coord: 109..136
e-value: 180.0
score: 1.3
coord: 302..329
e-value: 9.7
score: 10.2
coord: 274..301
e-value: 0.023
score: 23.9
NoneNo IPR availableGENE3D3.40.50.2000coord: 270..391
e-value: 8.6E-19
score: 67.5
coord: 80..160
e-value: 2.2E-5
score: 23.7
coord: 209..269
e-value: 1.2E-14
score: 54.0
coord: 161..208
e-value: 0.016
score: 14.4
NoneNo IPR availableGENE3D1.10.238.10coord: 392..463
e-value: 2.8E-10
score: 39.6
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 72..351
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 218..239
e-value: 0.013
score: 15.4
coord: 274..295
e-value: 5.6E-5
score: 22.8
coord: 245..267
e-value: 5.7E-5
score: 22.8
coord: 302..323
e-value: 0.0047
score: 16.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 220..241
score: 7.335
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 276..296
score: 6.21
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 193..215
score: 5.356
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 304..325
score: 5.748
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 248..271
score: 6.103
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 116..137
score: 4.578
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 447..459
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 434..467
score: 10.134
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 398..433
score: 7.233
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 386..461

Blast
[Close]
BLAST of TCONS_00006089-protein vs. Swiss-Prot (Human)
Match: LR74B (Leucine-rich repeat-containing protein 74B OS=Homo sapiens GN=LRRC74B PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 6.835e-20
Identity = 77/259 (29.73%), Postives = 125/259 (48.26%), Query Frame = 0 
Query:   75 ISRFLKFSPQEKLEISNKRLTQKQWVLIFTVLKEADFLVDINLSYCNLKLNALISLSVLLQDSVNIKKLDLSGIDINLVSAKIFNRL--EDTYLVSVCLANCRLDDKDVNSLLTFTKDNAILKNLDLSSNMIEGKQ-RILRDLLFENTILETLDLSWNHIRKIGCSSLVLGLIKNNSLLTLNLSFNGISDDGIKEITRMLEVNQTLESLNLRDNRITNQGAERLGYGLSVNNTLRKLDISGNMITAVGMQYILVGVIKS 330
            IS FL+    ++L + ++ L  +    + + L    ++  ++L    L      +L+  L  S +I  +DLS   + +  A+        +  +  + L+   L+++    L      +  LK+LDLS N +  +    L   L ENT L  L++SWNH+R  G  +   GL  N  L  L++S+NG  D G   +   L+ N  LE LN+ +NRI+  GA  LG GL VN TLR L +S N + + G      G++KS
Sbjct:   72 ISCFLRQGSAQELNLRHRGLGPQGARALASSLSSNPYVKRLDLRDNGLCGAGAEALAGALSKSSSIHDVDLSENQLGVAGAQALCAALTVNQAMRKMQLSGNGLEEQAAQHLAELLLAHTDLKSLDLSYNQLNDQAGETLGPALAENTGLTELNVSWNHLRGPGAVAFARGLEANIFLKVLDISYNGFGDPGASAVGEALKANNVLEELNMSNNRISAMGALSLGLGLRVNQTLRILVVSRNPMRSEG----CFGLLKS 326
The following BLAST results are available for this feature:
BLAST of TCONS_00006089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LR74B6.835e-2029.73Leucine-rich repeat-containing protein 74B OS=Homo... [more]
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