TCONS_00006082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006082
Unique NameTCONS_00006082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006082 ID=TCONS_00006082|Name=TCONS_00006082|organism=Clytia hemisphaerica|type=transcript|length=472bp
GTGACGTTGGCTTTGCAGATGTATGAGATGTATCGACATTTTAAATCTTT
TGATTATTTACCTGCACAAAGAGCCATATCTTGTTCCACCCACGAAAACT
TTGATACATTACAGAACAACTTCAAAGCACCATAACGTATTGCCAAGAAA
GGTTGTTTAGCCAAATCCATCAAGAATCTGACCGGTTCACTCGATAAATG
ATGGAAAAGTTTCTCACAAATCATCGATAACTCAACATCAGCTGGATCGT
GTAAAAACATGGTTGCTACAGCATCAAGGATTTTGCTTTTAGTTTGTTCA
TCTTCGGCATGAGAGGCGACCATTTGCCCAATCTTTTCCGTTGATTCTTT
TAATGAATCTGGATGTTTGTACAGCTCTTTCAAAGCATCACTTCTCGACG
AAATGAAAGCCAATGTCTCCACACAAAGGCAACGTAGTGAAGTGTCAGGA
CTGGATAGATTCTTATAAATGA
Run BLAST on NCBI

transcript from alignment at sc0000062:646890..647430-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006082 ID=TCONS_00006082|Name=TCONS_00006082|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at sc0000062:646890..647430- (Clytia hemisphaerica)
GTGACGTTGGCTTTGCAGATGTATGAGATGTATCGACATTTTAAATCTTT
TGATTATTTACCTGCACAAAGAGCCATATCTTGTTCCACCCACGAAAACT
TTGATACATTACAGAACAACTTCAAAGCACCATAACGTATTGCCAAGAAA
GGTTGTTTAGCCAAATCCATCAAGAATCTGACCGGTTCACTCGATAAATG
ATGGAAAAGTTTCTCACAAATCATCGATAACTCAACATCAGCTGGATCGT
GTAAAAACATGGTTGCTACAGCAACAAGGATTTTGCNTATCATCGATAAC
TCTACATCAGCTGGATCGTGTAAAAACATGGTTGCTACAGCATCAAGGAT
TTTGCTTTTAGTTTGTTCATCTTCGGCATGAGAGGCGACCATTTGCCCAA
TCTTTTCCGTTGATTCTTTTAATGAATCTGGATGTTTGTACAGCTCTTTC
AAAGCATCACTTCTCGACGAAATGAAAGCCAATGTCTCCACACAAAGGCA
ACGTAGTGAAGTGTCAGGACTGGATAGATTCTTATAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003458XLOC_003458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006082-exon-sc0000062-1575043694:647173..647430TCONS_00006082-exon-sc0000062-1575043694:647173..647430Clytia hemisphaericaexon
TCONS_00006082-exon-sc0000062-1575043694:646890..647103TCONS_00006082-exon-sc0000062-1575043694:646890..647103Clytia hemisphaericaexon
TCONS_00006082-exon-sc0000062-1510915933:647173..647430TCONS_00006082-exon-sc0000062-1510915933:647173..647430Clytia hemisphaericaexon
TCONS_00006082-exon-sc0000062-1510915933:646890..647103TCONS_00006082-exon-sc0000062-1510915933:646890..647103Clytia hemisphaericaexon
TCONS_00006082-exon-sc0000062-1491911889:647173..647430TCONS_00006082-exon-sc0000062-1491911889:647173..647430Clytia hemisphaericaexon
TCONS_00006082-exon-sc0000062-1491911889:646890..647103TCONS_00006082-exon-sc0000062-1491911889:646890..647103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:646890..647430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.653	17.9724	17.8278	22.1514	24.7816	19.263	12.2645	11.3669	15.6834	14.8435	11.5476	9.71664	8.14594	7.82178	8.49553	15.0083	27.0887	26.5903	5.0133	6.95434	9.40569	11.7721	19.196	14.9189	20.741	9.86042	4.10092	7.56645	6.54806	6.60582
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019538PSMD5
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043248 proteasome assembly
molecular_function GO:0005488 binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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