TCONS_00006052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006052
Unique NameTCONS_00006052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006052 ID=TCONS_00006052|Name=TCONS_00006052|organism=Clytia hemisphaerica|type=transcript|length=2374bp
tagattggaaaacaaataaattgaaaaaaaagaaaatcttgtgTGAAAAA
ACACAACTACAAGCACAAGAAGTTTATTTTGACGTGATGCCGATCTTCTG
AAAATTGAATGGAGTTAATTGCGTATTATAAATTGGTCTTTTGAATGATT
TTATTACGAAAAGATTACATCTTTTGATAAGACTTTCTACACCATCATAA
TGGACACAATGATATCTTCGAGTAGCGATGAACCTTACTTAACATCCGAT
GGTGCTATCAGTAGTACAACCTCCAGTATGACACAGTCACGGACAGCTGA
ATCCTACACAAGTCTCCTAAAAGATGACACGTTCACCACTCAAACACCGA
TAAGCCCGCAAAGCTCAATATCATCTATCAAAAGCCCAGATAGTACAACG
TTGCAACTGAATTCACCGCCCTCGGATATGTTTTCGCCCCCGCCCTCCGC
AGGATCTTCAAATACCATTGATACAAATCCATCAACGTCGGATATCTACC
TTGGAGCGTCGCCGGTCAAAATCGCTCGTACCACGTCATCTACATCCTCT
TCTTTTTCTAATGAACAATGTACCGTGTGCGGAGACAAAGCGACGTACTC
CGTCTTTGGAGCGGCTTCGTGTGACAGTTGTGGGGGTTTCTTTAAGAGGG
CCGTCAAAAATAGTCGAGAATACACGTGCGAAACTGGTAAAAGAGATTGC
TTGTTGAATAAGAAAACTCGGAATCGTTGCAAAGCATGTCGGTTACAGAG
ATGCTACAAAGTTGGCATGTCTTCTAATGCGGCCAAAGAATACGCAGACC
GTGAAAAGATGGAGAAGACACGCAAGAAGGAGGATAAGATACAACAAGTA
GTCTCTTCATCCCACTCCTCTTCACCCATGGAGGCTGTACAAACGATAGA
GATCAAGGAAATCAATGATGCCGAACTCTATGTGGATCCGAAAATCAACG
CTTTCGCTAATATTGCAGTGGACCCGATTCGACAATTATGTCTGGCTGCT
GATAAAcaaCTTGCTTCGCTAGCCGAATGGGCGAAACGTATGCCTCATTT
TACAACGTTGAATCTTTCGGATCAAGTCAAATTGTTACAATGGAACTGGG
CCGAGCTTCTCATTGGTGGCTTTTGTTATCGTTCAAGTGCTGTATCGGAT
GGCATCTTACTTGCGACAGGTTTGCACTTGTCACGTGACAATTTACAGAA
AGCCGGAGTGGGTGCAGTGGTCAATAAGTTGTTCAGTGAAGTCATCAACA
AAATGCAAAAGTTACAAATCGATGTTTCTGAGTGGGGATGTTTGAGAGCA
ATCATGCTCTTCGCACCAGACACTAAGGAGTTAACTGATCCACATCAAGT
CGAAGCCATACGACAACGTTACGTCGCAACCCTTTGTGATTATCATAAAA
AACAATATAAAGAAGATCCCAACCGACTGGGTAACTTATTACTCCGTTTG
CCGCCTTTAAAGGCAATTGCTTTGCAAGTACTGGAACAtttgttcttttt
caaattaattggTGATGTTCCTATTGATACATTCTTAATGGAAATGTTGG
ATGTTGATAGCCATTGAATGGATTGTTTAAATGAAATTCAATCTACATGA
AAATATTGGATGAAACGAATCCTTGGTGAAATCACCCATACACCTATCAA
CATTTGAAGCGTTGGAGACTGGGCTCGAATTTACCATGAATGAATTACGT
CAAAACGACTAAAGTCGTTATATTTGCAGTTTCGCAGACCTCTTTTCCTA
GCAAACTCATTACCAGACCCTGAAAAGCCGACCGCGCCGTTAAGGGTTGA
TAGGTTGTATTAACGTGAAAATCTATGGAAAAGACGGATACGTACAAAGT
GAGATTTGTTGCTGGTTTGAAATCCAGATTATGTGTTTGTTGGTAACTGC
TGGTCTAAATACCACTGGGTTGCTCTGGTCTATCATATTGAAATGTAATG
ATTGATGGTTTAGTGGTTTATGAGATTGACGAAGTATTTGTAGATAGGAT
AAAGGCCGATAAAGAGGAGTGATTAGATGGATAATCATTATTGTAACTTT
TCCGTTTTGCCAGAGTAAGAGCAAAGCCTTTTTGGCGATTTTTGGTTAGA
TTTGGATTATGATATGATCAAATCTTTTATTTGTCCAATTTTTTTATGCC
AATGATGCGTTggtgaagatgaagaagaaacttGTAGATAGGGACAGAAG
TCTGTTTAACAGACCTTCTTTTTACAATAAATATCAGCCTGATGACATCG
GAAGTTAGGTTAATGATTTGTTAATTTGacacagggtgtccggaaagaAG
TACAGTATCAAAACAGatacaaaatcataaattttttgTGTCACAAAAGT
TTCCTGCATGGTAACCAATTCTTC
Run BLAST on NCBI

protein sequence of retinoid X receptor

>TCONS_00006052-protein ID=TCONS_00006052-protein|Name=retinoid X receptor|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MDTMISSSSDEPYLTSDGAISSTTSSMTQSRTAESYTSLLKDDTFTTQTP
ISPQSSISSIKSPDSTTLQLNSPPSDMFSPPPSAGSSNTIDTNPSTSDIY
LGASPVKIARTTSSTSSSFSNEQCTVCGDKATYSVFGAASCDSCGGFFKR
AVKNSREYTCETGKRDCLLNKKTRNRCKACRLQRCYKVGMSSNAAKEYAD
REKMEKTRKKEDKIQQVVSSSHSSSPMEAVQTIEIKEINDAELYVDPKIN
AFANIAVDPIRQLCLAADKQLASLAEWAKRMPHFTTLNLSDQVKLLQWNW
AELLIGGFCYRSSAVSDGILLATGLHLSRDNLQKAGVGAVVNKLFSEVIN
KMQKLQIDVSEWGCLRAIMLFAPDTKELTDPHQVEAIRQRYVATLCDYHK
KQYKEDPNRLGNLLLRLPPLKAIALQVLEHLFFFKLIGDVPIDTFLMEML
DVDSH
Run BLAST on NCBI

transcript from alignment at sc0000062:177567..183311-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006052 ID=TCONS_00006052|Name=TCONS_00006052|organism=Clytia hemisphaerica|type=transcript|length=5745bp|location=Sequence derived from alignment at sc0000062:177567..183311- (Clytia hemisphaerica)
TAGATTGGAAAACAAATAAATTGAAAAAAAAGAAAATCTTGTGTGAAAAA
ACACAACTACAAGCACAAGAAGTTTATTTTGACGTGATGCCGATCTTCTG
AAAATTGAATGGAGTTAATTGCGTATTATAAATTGGTCTTTTGAATGATT
TTATTACGAAAAGATTACATCTTTTGATAAGACTTTCTACACCATCATAA
TGGACACAATGATATCTTCGAGTAGCGATGAACCTTACTTAACATCCGAT
GGTGCTATCAGTAGTACAACCTCCAGTATGACACAGTCACGGACAGCTGA
ATCCTACACAAGTCTCCTAAAAGATGACACGTTCACCACTCAAACACCGA
TAAGCCCGCAAAGCTCAATATCATCTATCAAAAGCCCAGATAGTACAACG
TTGCAACTGAATTCACCGCCCTCGGATATGTTTTCGCCCCCGCCCTCCGC
AGGATCTTCAAATACCATTGATACAAATCCATCAACGTCGGATATCTACC
TTGGAGCGTCGCCGGTCAAAATCGCTCGTACCACGTCATCTACATCCTCT
TCTTTTTCTAATGAACAATGTACCGTGTGCGGAGACAAAGCGACGTACTC
CGTCTTTGGAGCGGCTTCGTGTGACAGTTGTGGGGGTTTCTTTAAGAGGG
CCGTCAAAAATAGTCGAGAATACACGTGCGAAACTGGTAAAAGAGATTGC
TTGTTGAATAAGAAAACTCGGAATCGTTGCAAAGCATGTCGGTTACAGAG
ATGCTACAAAGTTGGCATGTCTTCTAATGGTTAGTATCAATACAAATCTT
TAAATGTGTACTTTTACACGGATATTTTCAATATACTAATAAATCATTAT
TGGTTTAATATTCCAACTTCAAAGAAATAGATAATTGGATGGTTTGATGA
GGACGAAGAAAAACCCTCCGTATAAGTGTATTGCTAATAGATCTTATCGG
AGTTTTTGATTTTTCTTAAAAAGTGATGCATTGTGGGATTGTTTCGGGAG
TATTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAAT
ACTCCCGAAACAATCCCACAATGCATTGTTTTTTAGAAAAAATTGACGTG
CTACATTTTGCAATTTCTCGCGCGCTTGCAACGCAACGCTAACTCCGACA
AGATCTATTGATTGAGGTTGCTTTCTACTTCTTTATGTAGCGGCCAAAGA
ATACGCAGACCGTGAAAAGATGGAGAAGACACGCAAGAAGGAGGATAAGA
TACAACAAGTAGTCTCTTCATCCCACTCCTCTTCACCCATGGAGGCTGTA
CAAACGATAGAGATCAAGGAAATCAATGATGCCGAACTCTATGTGGATCC
GAAAATCAACGCTTTCGCTAATATTGCAGTGGACCCGATTCGACAATTAT
GTCTGGCTGCTGATAAACAAGTAATTTTTCTTTTTACTGATATGTTGTTT
TCGGAGGAAGCCTTTGATATAGTACGTACGCAGTGAAAGAAGTTGGAGGT
TTAGCAAAAGCGTGCATCTATTGTTTGAATAGCGTCATTTCTATTGTTCT
CTGCGTACAAGGGGAGGGTATCATTTATTTCGAAAATCTTTGCCTAGGTA
CAATACACCTTTTCGACCGTATTCGCGCAGGCATTATTTTGTCCGCTTTA
TCCCACTAAAACCGCCTCAGTCCTTTTTTCACACATAGACAATAGAAAAA
TACGTCAAAAAAGGATTGGGACGGTTTTGTGGGATAAAGCGGACTAAAAA
ATGTCTGTGCGACTTCGGCCGAAAAGGTGTATAATATGGATATGACCCTG
AGTTATGATGGTTACTGGCTTTGTGATCTTTTTCTATTTTATTCGGGGTC
TAGAGAAGAAAATGGTGGATTTCGTATCGGTTTCGAGCGTTCCAATAATC
GTGACATTGGTCATTGGCATGCCTTGTTTGAATTCAGGCGTTCATCTAGC
CTGAACGATAAGGGAAGAAGGATGGGAAATTCTCCTTTATCCACTCTAGA
TTATGGGTTTGAGTCCTAGCACAGTTATTGTTGACAGGCCTCTTGAGTCT
CTACCAGCACCTTTAGTTTAGATAGCATCGATTGAATGTTAGTACAAGTG
GCATATTCGTCTTTTGATTTAATTACAACATAATGTTAAAATTGTCCCCA
ATGTTTTTACACCTCGAAAACTCCAGTATTAAAATGAAATTAAGCGTTTA
GCTTTTAAAGTTCGTCTAAATCTCATTGACCAACATTTTCAAAAATTGAA
ATAAATTTCTATTCTATTTATCTATTTTTTAGCTTGCTTCGCTAGCCGAA
TGGGCGAAACGTATGCCTCATTTTACAACGTTGAATCTTTCGGATCAAGT
CAAATTGTTACAATGGAACTGGGCCGAGCTTCTCATTGGTGGCTTTTGTT
ATCGTTCAAGTGCTGTATCGGATGGCATCTTACTTGCGACAGGTAGTGGC
AAATTGTATACAACTTATTTACTCTAGGCTAAATTTCCTAAGATTGCTAC
TACTGGTAATATCATGAATTGGAAAGGCTGTTAAAACTCAAATTTGGTTC
TTTCGATTGAAGGTCTGTTTACACTGCTATCATAGCGTAAGATATTCGGT
ATTCGAATTTTAATTACCCACAGGCTCCTTAAAGAAGCCAAGCGGGATAT
GTTAGACCTTTTACCCCGAATATCTATAACTCGAATGTCTCCTTAACTCG
AATAAGTTTTATGGTCCCTTCAGTTAGCAATACCTCATAAACCTTACTCC
ATAACTTGAAATTTCCTTAACTCGAACAAATTTGTGTTCCGTGTCCGTGT
TCGAGTTAATGAGAGTGCGCTGCAATGAAATATTAGAGTTTCACTAATTG
CTAGTTAAATTTTAATCTAGTTAAATTTTAATCTAGTCGCCCCTTATTTA
CTTAGGTTTGCACTTGTCACGTGACAATTTACAGAAAGCCGGAGTGGGTG
CAGTGGTCAATAAGTTGTTCAGTGAAGTCATCAACAAAATGCAAAAGTTA
CAAATCGATGTTTCTGAGTGGGGATGTTTGAGAGCAATCATGCTCTTCGC
ACCAGGTAAATAGTTCACTTTTCAATTTGCTTTTTCTATGATATATATCT
TGAAAGGAGGCGAGCCTCTATGATGGCAAAGTAGAATAAACAATAGACTC
GCTCGGCGCGGGAGTGAAGACAGTTGTGTTTTCTATTGTCTAAAAATGTC
CAACATTCCATCCAACATGCCATTTTCTCTCTGTTGGACGGAATGTTGGA
ATCGTTTACTCGAATGCAAAAATCGGAAAGGAAGAAAAAATTATGTTGGA
AGAAGAAAAAAAGTGTTGGATGGGAGTTTAATCGCCATCAAACATTTTGT
CCAACATTTACTTCTTTTTTTCGTGTTGGATCATTTTGGATTCGTTTACT
CAGCTCACGTCCAACATTTGAAAGAGAATGACGTCATTAGAAATAGAACC
GAATGTTTTTTTCAAAAATTCGAAAAATCTCGTAACAAATTTAAAAAGAT
GGTAGAGAAGCTACTAGCTCCAATGTTTTTTTTTTGGAACTGAAATTAAG
CGATCTATCGTAGAGGTGTGACCCTTTAAAAGGTACGTTTTCCAGGCTTC
CCAAAATGCACTGTAAGTGTGCAAAAAATGAGAACATGGTTTTTGTTGCA
AAATTTTAGAAAATTTGACCATTTTTTGCTTTGAAATAAATAAATAAATT
TCACGAAATTGCACCATAAGAGTCGATTTTTCGCCAGAATTTTCTCTGCA
TTGTAAGGATCCAATTGTTAGACTATAATTTTTGTCCACATGAACAGCAG
TAGTGGCACTTGTTACACTGGGTATAAAAATCCTCGCCATTTCTAATTTG
AAAAGAATGAATTAAAAAAGAATGAATGAACACCCATGTTGGATGAAAAT
AATGTTGGACATTGCGACGAAACGATTTTAAGGAGATCCAACACCTTTCC
AAAATTTATCCAACATTTGTCCAACATTTCAATTTCTATGTTGGATGAAA
TGTTGGAATCGTTTACCTCGGCCTTAAGCTAATGTCAGGAGATACGTTGA
ATTGTGTCCTTTAAGCTCTAGGTAGTATTCAATAAAGTTTTACTAAAATC
TACTAGAGGAGTTTGGACCGATTGGTTAGCAGCTTGCTTGACTCCTTATC
GAAAGGTATCTTTCCTAAAATGTTATGGGATCTTTCACCAGTCAACCAGT
TGTTGTGAGATCTCCTCTACCTCGTGTCGCTAATTGGTCTAAGATAACAG
TCCAAGTCAAATAAGAAACTTATAACTTGAATGTTAGCAGTAAATTCGGA
CCCTAAACTAAACCGAGTCTTAGATAAAAGTGATACAGCTATATCACTCT
TATTCGATCTTCAAGAGACCAAGGATCTTCTTCGAATTAGAGAAAGATTC
GAATCATGGGGGACGATTTTATACGACTTTCCAACTGAAGGAACCAATGT
TTAAGTCTGAGTTACAGAAAAATTGTGATTGGAGGCCCAGGCCATTTTTA
ATGCCCCTTAAGAGTCCGGTTATCAGACGCTACCCCTCTTGAAATTACTA
AAATATTGGTAAAAACAGCCTTTTTAGTGAAAAACACTAGAAAAAGTGCC
CTTTTTGGCCACAAACGGACGCTGCCTTGCCCTTTTTAAAATATGGCCTA
CTGGACTATAGTTGTAAACTCTAAACTTGTTTCTTTTTAGACACTAAGGA
GTTAACTGATCCACATCAAGTCGAAGCCATACGACAACGTTACGTCGCAA
CCCTTTGTGATTATCATAAAAAACAATATAAAGAAGATCCCAACCGACTG
GGTAACTTATTACTCCGTTTGCCGCCTTTAAAGGCAATTGCTTTGCAAGT
ACTGGAACATTTGTTCTTTTTCAAATTAATTGGTGATGTTCCTATTGATA
CATTCTTAATGGAAATGTTGGATGTTGATAGCCATTGAATGGATTGTTTA
AATGAAATTCAATCTACATGAAAATATTGGATGAAACGAATCCTTGGTGA
AATCACCCATACACCTATCAACATTTGAAGCGTTGGAGACTGGGCTCGAA
TTTACCATGAATGAATTACGTCAAAACGACTAAAGTCGTTATATTTGCAG
TTTCGCAGACCTCTTTTCCTAGCAAACTCATTACCAGACCCTGAAAAGCC
GACCGCGCCGTTAAGGGTTGATAGGTTGTATTAACGTGAAAATCTATGGA
AAAGACGGATACGTACAAAGTGAGATTTGTTGCTGGTTTGAAATCCAGAT
TATGTGTTTGTTGGTAACTGCTGGTCTAAATACCACTGGGTTGCTCTGGT
CTATCATATTGAAATGTAATGATTGATGGTTTAGTGGTTTATGAGATTGA
CGAAGTATTTGTAGATAGGATAAAGGCCGATAAAGAGGAGTGATTAGATG
GATAATCATTATTGTAACTTTTCCGTTTTGCCAGAGTAAGAGCAAAGCCT
TTTTGGCGATTTTTGGTTAGATTTGGATTATGATATGATCAAATCTTTTA
TTTGTCCAATTTTTTTATGCCAATGATGCGTTGGTGAAGATGAAGAAGAA
ACTTGTAGATAGGGACAGAAGTCTGTTTAACAGACCTTCTTTTTACAATA
AATATCAGCCTGATGACATCGGAAGTTAGGTTAATGATTTGTTAATTTGA
CACAGGGTGTCCGGAAAGAAGTACAGTATCAAAACAGATACAAAATCATA
AATTTTTTGTGTCACAAAAGTTTCCTGCATGGTAACCAATTCTTC

Coding sequence (CDS) from alignment at sc0000062:177567..183311-

>TCONS_00006052 ID=TCONS_00006052|Name=TCONS_00006052|organism=Clytia hemisphaerica|type=CDS|length=6840bp|location=Sequence derived from alignment at sc0000062:177567..183311- (Clytia hemisphaerica)
ACACTAAGGAGTTAACTGATCCACATCAAGTCGAAGCCATACGACAACGT
TACGTCGCAACCCTTTGTGATTATCATAAAAAACAATATAAAGAAGATCC
CAACCGACTGGGTAACTTATTACTCCGTTTGCCGCCTTTAAAGGCAATTG
CTTTGCAAGTACTGGAACATTTGTTCTTTTTCAAATTAATTGGTGATGTT
CCTATTGATACATTCTTAATGGAAATGTTGGATGTTGATAGCCATTGAGT
TTGCACTTGTCACGTGACAATTTACAGAAAGCCGGAGTGGGTGCAGTGGT
CAATAAGTTGTTCAGTGAAGTCATCAACAAAATGCAAAAGTTACAAATCG
ATGTTTCTGAGTGGGGATGTTTGAGAGCAATCATGCTCTTCGCACCAGCT
TGCTTCGCTAGCCGAATGGGCGAAACGTATGCCTCATTTTACAACGTTGA
ATCTTTCGGATCAAGTCAAATTGTTACAATGGAACTGGGCCGAGCTTCTC
ATTGGTGGCTTTTGTTATCGTTCAAGTGCTGTATCGGATGGCATCTTACT
TGCGACAGCGGCCAAAGAATACGCAGACCGTGAAAAGATGGAGAAGACAC
GCAAGAAGGAGGATAAGATACAACAAGTAGTCTCTTCATCCCACTCCTCT
TCACCCATGGAGGCTGTACAAACGATAGAGATCAAGGAAATCAATGATGC
CGAACTCTATGTGGATCCGAAAATCAACGCTTTCGCTAATATTGCAGTGG
ACCCGATTCGACAATTATGTCTGGCTGCTGATAAACAAATGGACACAATG
ATATCTTCGAGTAGCGATGAACCTTACTTAACATCCGATGGTGCTATCAG
TAGTACAACCTCCAGTATGACACAGTCACGGACAGCTGAATCCTACACAA
GTCTCCTAAAAGATGACACGTTCACCACTCAAACACCGATAAGCCCGCAA
AGCTCAATATCATCTATCAAAAGCCCAGATAGTACAACGTTGCAACTGAA
TTCACCGCCCTCGGATATGTTTTCGCCCCCGCCCTCCGCAGGATCTTCAA
ATACCATTGATACAAATCCATCAACGTCGGATATCTACCTTGGAGCGTCG
CCGGTCAAAATCGCTCGTACCACGTCATCTACATCCTCTTCTTTTTCTAA
TGAACAATGTACCGTGTGCGGAGACAAAGCGACGTACTCCGTCTTTGGAG
CGGCTTCGTGTGACAGTTGTGGGGGTTTCTTTAAGAGGGCCGTCAAAAAT
AGTCGAGAATACACGTGCGAAACTGGTAAAAGAGATTGCTTGTTGAATAA
GAAAACTCGGAATCGTTGCAAAGCATGTCGGTTACAGAGATGCTACAAAG
TTGGCATGTCTTCTAATGACACTAAGGAGTTAACTGATCCACATCAAGTC
GAAGCCATACGACAACGTTACGTCGCAACCCTTTGTGATTATCATAAAAA
ACAATATAAAGAAGATCCCAACCGACTGGGTAACTTATTACTCCGTTTGC
CGCCTTTAAAGGCAATTGCTTTGCAAGTACTGGAACATTTGTTCTTTTTC
AAATTAATTGGTGATGTTCCTATTGATACATTCTTAATGGAAATGTTGGA
TGTTGATAGCCATTGAGTTTGCACTTGTCACGTGACAATTTACAGAAAGC
CGGAGTGGGTGCAGTGGTCAATAAGTTGTTCAGTGAAGTCATCAACAAAA
TGCAAAAGTTACAAATCGATGTTTCTGAGTGGGGATGTTTGAGAGCAATC
ATGCTCTTCGCACCAGCTTGCTTCGCTAGCCGAATGGGCGAAACGTATGC
CTCATTTTACAACGTTGAATCTTTCGGATCAAGTCAAATTGTTACAATGG
AACTGGGCCGAGCTTCTCATTGGTGGCTTTTGTTATCGTTCAAGTGCTGT
ATCGGATGGCATCTTACTTGCGACAGCGGCCAAAGAATACGCAGACCGTG
AAAAGATGGAGAAGACACGCAAGAAGGAGGATAAGATACAACAAGTAGTC
TCTTCATCCCACTCCTCTTCACCCATGGAGGCTGTACAAACGATAGAGAT
CAAGGAAATCAATGATGCCGAACTCTATGTGGATCCGAAAATCAACGCTT
TCGCTAATATTGCAGTGGACCCGATTCGACAATTATGTCTGGCTGCTGAT
AAACAAATGGACACAATGATATCTTCGAGTAGCGATGAACCTTACTTAAC
ATCCGATGGTGCTATCAGTAGTACAACCTCCAGTATGACACAGTCACGGA
CAGCTGAATCCTACACAAGTCTCCTAAAAGATGACACGTTCACCACTCAA
ACACCGATAAGCCCGCAAAGCTCAATATCATCTATCAAAAGCCCAGATAG
TACAACGTTGCAACTGAATTCACCGCCCTCGGATATGTTTTCGCCCCCGC
CCTCCGCAGGATCTTCAAATACCATTGATACAAATCCATCAACGTCGGAT
ATCTACCTTGGAGCGTCGCCGGTCAAAATCGCTCGTACCACGTCATCTAC
ATCCTCTTCTTTTTCTAATGAACAATGTACCGTGTGCGGAGACAAAGCGA
CGTACTCCGTCTTTGGAGCGGCTTCGTGTGACAGTTGTGGGGGTTTCTTT
AAGAGGGCCGTCAAAAATAGTCGAGAATACACGTGCGAAACTGGTAAAAG
AGATTGCTTGTTGAATAAGAAAACTCGGAATCGTTGCAAAGCATGTCGGT
TACAGAGATGCTACAAAGTTGGCATGTCTTCTAATGACACTAAGGAGTTA
ACTGATCCACATCAAGTCGAAGCCATACGACAACGTTACGTCGCAACCCT
TTGTGATTATCATAAAAAACAATATAAAGAAGATCCCAACCGACTGGGTA
ACTTATTACTCCGTTTGCCGCCTTTAAAGGCAATTGCTTTGCAAGTACTG
GAACATTTGTTCTTTTTCAAATTAATTGGTGATGTTCCTATTGATACATT
CTTAATGGAAATGTTGGATGTTGATAGCCATTGAGTTTGCACTTGTCACG
TGACAATTTACAGAAAGCCGGAGTGGGTGCAGTGGTCAATAAGTTGTTCA
GTGAAGTCATCAACAAAATGCAAAAGTTACAAATCGATGTTTCTGAGTGG
GGATGTTTGAGAGCAATCATGCTCTTCGCACCAGCTTGCTTCGCTAGCCG
AATGGGCGAAACGTATGCCTCATTTTACAACGTTGAATCTTTCGGATCAA
GTCAAATTGTTACAATGGAACTGGGCCGAGCTTCTCATTGGTGGCTTTTG
TTATCGTTCAAGTGCTGTATCGGATGGCATCTTACTTGCGACAGCGGCCA
AAGAATACGCAGACCGTGAAAAGATGGAGAAGACACGCAAGAAGGAGGAT
AAGATACAACAAGTAGTCTCTTCATCCCACTCCTCTTCACCCATGGAGGC
TGTACAAACGATAGAGATCAAGGAAATCAATGATGCCGAACTCTATGTGG
ATCCGAAAATCAACGCTTTCGCTAATATTGCAGTGGACCCGATTCGACAA
TTATGTCTGGCTGCTGATAAACAAATGGACACAATGATATCTTCGAGTAG
CGATGAACCTTACTTAACATCCGATGGTGCTATCAGTAGTACAACCTCCA
GTATGACACAGTCACGGACAGCTGAATCCTACACAAGTCTCCTAAAAGAT
GACACGTTCACCACTCAAACACCGATAAGCCCGCAAAGCTCAATATCATC
TATCAAAAGCCCAGATAGTACAACGTTGCAACTGAATTCACCGCCCTCGG
ATATGTTTTCGCCCCCGCCCTCCGCAGGATCTTCAAATACCATTGATACA
AATCCATCAACGTCGGATATCTACCTTGGAGCGTCGCCGGTCAAAATCGC
TCGTACCACGTCATCTACATCCTCTTCTTTTTCTAATGAACAATGTACCG
TGTGCGGAGACAAAGCGACGTACTCCGTCTTTGGAGCGGCTTCGTGTGAC
AGTTGTGGGGGTTTCTTTAAGAGGGCCGTCAAAAATAGTCGAGAATACAC
GTGCGAAACTGGTAAAAGAGATTGCTTGTTGAATAAGAAAACTCGGAATC
GTTGCAAAGCATGTCGGTTACAGAGATGCTACAAAGTTGGCATGTCTTCT
AATGACACTAAGGAGTTAACTGATCCACATCAAGTCGAAGCCATACGACA
ACGTTACGTCGCAACCCTTTGTGATTATCATAAAAAACAATATAAAGAAG
ATCCCAACCGACTGGGTAACTTATTACTCCGTTTGCCGCCTTTAAAGGCA
ATTGCTTTGCAAGTACTGGAACATTTGTTCTTTTTCAAATTAATTGGTGA
TGTTCCTATTGATACATTCTTAATGGAAATGTTGGATGTTGATAGCCATT
GAGTTTGCACTTGTCACGTGACAATTTACAGAAAGCCGGAGTGGGTGCAG
TGGTCAATAAGTTGTTCAGTGAAGTCATCAACAAAATGCAAAAGTTACAA
ATCGATGTTTCTGAGTGGGGATGTTTGAGAGCAATCATGCTCTTCGCACC
AGCTTGCTTCGCTAGCCGAATGGGCGAAACGTATGCCTCATTTTACAACG
TTGAATCTTTCGGATCAAGTCAAATTGTTACAATGGAACTGGGCCGAGCT
TCTCATTGGTGGCTTTTGTTATCGTTCAAGTGCTGTATCGGATGGCATCT
TACTTGCGACAGCGGCCAAAGAATACGCAGACCGTGAAAAGATGGAGAAG
ACACGCAAGAAGGAGGATAAGATACAACAAGTAGTCTCTTCATCCCACTC
CTCTTCACCCATGGAGGCTGTACAAACGATAGAGATCAAGGAAATCAATG
ATGCCGAACTCTATGTGGATCCGAAAATCAACGCTTTCGCTAATATTGCA
GTGGACCCGATTCGACAATTATGTCTGGCTGCTGATAAACAAATGGACAC
AATGATATCTTCGAGTAGCGATGAACCTTACTTAACATCCGATGGTGCTA
TCAGTAGTACAACCTCCAGTATGACACAGTCACGGACAGCTGAATCCTAC
ACAAGTCTCCTAAAAGATGACACGTTCACCACTCAAACACCGATAAGCCC
GCAAAGCTCAATATCATCTATCAAAAGCCCAGATAGTACAACGTTGCAAC
TGAATTCACCGCCCTCGGATATGTTTTCGCCCCCGCCCTCCGCAGGATCT
TCAAATACCATTGATACAAATCCATCAACGTCGGATATCTACCTTGGAGC
GTCGCCGGTCAAAATCGCTCGTACCACGTCATCTACATCCTCTTCTTTTT
CTAATGAACAATGTACCGTGTGCGGAGACAAAGCGACGTACTCCGTCTTT
GGAGCGGCTTCGTGTGACAGTTGTGGGGGTTTCTTTAAGAGGGCCGTCAA
AAATAGTCGAGAATACACGTGCGAAACTGGTAAAAGAGATTGCTTGTTGA
ATAAGAAAACTCGGAATCGTTGCAAAGCATGTCGGTTACAGAGATGCTAC
AAAGTTGGCATGTCTTCTAATGACACTAAGGAGTTAACTGATCCACATCA
AGTCGAAGCCATACGACAACGTTACGTCGCAACCCTTTGTGATTATCATA
AAAAACAATATAAAGAAGATCCCAACCGACTGGGTAACTTATTACTCCGT
TTGCCGCCTTTAAAGGCAATTGCTTTGCAAGTACTGGAACATTTGTTCTT
TTTCAAATTAATTGGTGATGTTCCTATTGATACATTCTTAATGGAAATGT
TGGATGTTGATAGCCATTGAGTTTGCACTTGTCACGTGACAATTTACAGA
AAGCCGGAGTGGGTGCAGTGGTCAATAAGTTGTTCAGTGAAGTCATCAAC
AAAATGCAAAAGTTACAAATCGATGTTTCTGAGTGGGGATGTTTGAGAGC
AATCATGCTCTTCGCACCAGCTTGCTTCGCTAGCCGAATGGGCGAAACGT
ATGCCTCATTTTACAACGTTGAATCTTTCGGATCAAGTCAAATTGTTACA
ATGGAACTGGGCCGAGCTTCTCATTGGTGGCTTTTGTTATCGTTCAAGTG
CTGTATCGGATGGCATCTTACTTGCGACAGCGGCCAAAGAATACGCAGAC
CGTGAAAAGATGGAGAAGACACGCAAGAAGGAGGATAAGATACAACAAGT
AGTCTCTTCATCCCACTCCTCTTCACCCATGGAGGCTGTACAAACGATAG
AGATCAAGGAAATCAATGATGCCGAACTCTATGTGGATCCGAAAATCAAC
GCTTTCGCTAATATTGCAGTGGACCCGATTCGACAATTATGTCTGGCTGC
TGATAAACAAATGGACACAATGATATCTTCGAGTAGCGATGAACCTTACT
TAACATCCGATGGTGCTATCAGTAGTACAACCTCCAGTATGACACAGTCA
CGGACAGCTGAATCCTACACAAGTCTCCTAAAAGATGACACGTTCACCAC
TCAAACACCGATAAGCCCGCAAAGCTCAATATCATCTATCAAAAGCCCAG
ATAGTACAACGTTGCAACTGAATTCACCGCCCTCGGATATGTTTTCGCCC
CCGCCCTCCGCAGGATCTTCAAATACCATTGATACAAATCCATCAACGTC
GGATATCTACCTTGGAGCGTCGCCGGTCAAAATCGCTCGTACCACGTCAT
CTACATCCTCTTCTTTTTCTAATGAACAATGTACCGTGTGCGGAGACAAA
GCGACGTACTCCGTCTTTGGAGCGGCTTCGTGTGACAGTTGTGGGGGTTT
CTTTAAGAGGGCCGTCAAAAATAGTCGAGAATACACGTGCGAAACTGGTA
AAAGAGATTGCTTGTTGAATAAGAAAACTCGGAATCGTTGCAAAGCATGT
CGGTTACAGAGATGCTACAAAGTTGGCATGTCTTCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003449XLOC_003449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006052-exon-sc0000062-1575043694:182533..183311TCONS_00006052-exon-sc0000062-1575043694:182533..183311Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1575043694:181892..182121TCONS_00006052-exon-sc0000062-1575043694:181892..182121Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1575043694:180870..181029TCONS_00006052-exon-sc0000062-1575043694:180870..181029Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1575043694:180257..180406TCONS_00006052-exon-sc0000062-1575043694:180257..180406Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1575043694:177567..178621TCONS_00006052-exon-sc0000062-1575043694:177567..178621Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1510915933:182533..183311TCONS_00006052-exon-sc0000062-1510915933:182533..183311Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1510915933:181892..182121TCONS_00006052-exon-sc0000062-1510915933:181892..182121Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1510915933:180870..181029TCONS_00006052-exon-sc0000062-1510915933:180870..181029Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1510915933:180257..180406TCONS_00006052-exon-sc0000062-1510915933:180257..180406Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1510915933:177567..178621TCONS_00006052-exon-sc0000062-1510915933:177567..178621Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1491911889:182533..183311TCONS_00006052-exon-sc0000062-1491911889:182533..183311Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1491911889:181892..182121TCONS_00006052-exon-sc0000062-1491911889:181892..182121Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1491911889:180870..181029TCONS_00006052-exon-sc0000062-1491911889:180870..181029Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1491911889:180257..180406TCONS_00006052-exon-sc0000062-1491911889:180257..180406Clytia hemisphaericaexon
TCONS_00006052-exon-sc0000062-1491911889:177567..178621TCONS_00006052-exon-sc0000062-1491911889:177567..178621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
retinoid X receptorTCONS_00006052-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:177567..183311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.09713	3.30783	3.07999	3.32188	41.4572	31.9742	27.4727	30.473	15.4108	18.2849	12.4682	10.6299	18.1786	17.3168	17.2423	24.1555	16.3858	14.0714	13.9183	18.6842	14.608	14.8611	9.03749	10.7616	9.62389	11.6039	20.4699	16.7143	14.0231	13.6017
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR000003Retinoid-X_rcpt/HNF4
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00006052 vs. Swiss-Prot (Human)
Match: RXRA (Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.630e-94
Identity = 160/336 (47.62%), Postives = 224/336 (66.67%), Query Frame = 2 
Query:  569 CTVCGDKATYSVFGAASCDSCGGFFKRAVKNSREYTCETGKRDCLLNKKTRNRCKACRLQRCYKVGMSSNAAKEYADREKMEKTRKKEDKIQQVVXXXXXXXPMEAVQTIEIKEINDAELYVDPKINAF--ANIAV------DPIRQLCLAADKQLASLAEWAKRMPHFTTLNLSDQVKLLQWNWAELLIGGFCYRSSAVSDGILLATGLHLSRDNLQKAGVGAVVNKLFSEVINKMQKLQIDVSEWGCLRAIMLFAPDTKELTDPHQVEAIRQRYVATLCDYHKKQYKEDXXXXXXXXXXXXXXKAIALQVLEHLFFFKLIGDVPIDTFLMEMLD 1552
            C +CGD+++   +G  SC+ C GFFKR V+    YTC   K DCL++K+ RNRC+ CR Q+C  +GM   A +E   R K     + E++++             A + + ++ I +AEL V+PK   +  AN+ +      DP+  +C AADKQL +L EWAKR+PHF+ L L DQV LL+  W ELLI  F +RS AV DGILLATGLH+ R++   AGVGA+ +++ +E+++KM+ +Q+D +E GCLRAI+LF PD+K L++P +VEA+R++  A+L  Y K +Y E P R   LLLRLP L++I L+ LEHLFFFKLIGD PIDTFLMEML+
Sbjct:  135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK-DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGK----DRNENEVESTS---------SANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 456
The following BLAST results are available for this feature:
BLAST of TCONS_00006052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RXRA2.630e-9447.62Retinoic acid receptor RXR-alpha OS=Homo sapiens G... [more]
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