TCONS_00005320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005320
Unique NameTCONS_00005320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005320 ID=TCONS_00005320|Name=TCONS_00005320|organism=Clytia hemisphaerica|type=transcript|length=540bp
AATGAACAAACGATCCAAGTATCTAATTATATTGtccatgaaaattacca
aaaccCGCGGTTGAGTAATGATCTAGCTCTCGTGCAGCTTGAAAAACCAG
TGATCTTTGGAAGAAATGTACAACCAATATGTTTACCGAAACAAGGAGAA
AGGACAGATGTTGGAAAGAAATGCTACGTGACAGGTTGGGGCAAGACAAG
CAACCCAGGGATGGTGAACAACATTCTCCAACAACTTCCAATGACAGTAC
AAAACAAAACACGATGTTCAACAATGAACAGCAAATATGCACCGTTGACT
GATCAAATGTTGTGTGCAGCCAATACTGAAGCCGTAGAGAATCAATCAGT
TTGTCATGGAGATTCTGGCAGTCCGTTTGTTTGCCAAGAAAGCAATGGTT
CATGGACATTACATGGTTCGGTGAGCTGGGGATCACCACAATGTGATATC
AAAGATGCTTTCACTGTCTTTGCAAGGATCAGTGAATTTAGAAACTGGAT
TGACCAAAatataaaatagaaataacTGTTTTACTCGAAG
Run BLAST on NCBI

transcript from alignment at sc0000052:102750..104028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005320 ID=TCONS_00005320|Name=TCONS_00005320|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at sc0000052:102750..104028- (Clytia hemisphaerica)
AATGAACAAACGATCCAAGTATCTAATTATATTGTCCATGAAAATTACCA
AAACCCGCGGTTGAGTAATGATCTAGCTCTCGTGCAGCTTGAAAAACCAG
TGATCTTTGGAAGAAATGTACAACCAATATGTTTACCGAAACAAGGAGAA
AGGACAGATGTTGGAAAGAAATGCTACGTGACAGGTTGGTTAAAAAGTTA
CACGTGTTTTTATAAGAACAAACTATATAAGAACATAAGGCCTCGATGGC
TAAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCTTTAAACTCAAAAA
GTTAAGAACATCCGAAGGCTTCAAATATTTTGGATGTTGTTATAAAAAAA
CGTGTATGGCTGCATGGAGCAAAGTTTTGTACTGGGCCAAGGCTAGTGGT
CAAAGCAAGGATTTTCGTCAGATATGTAAAACGGATTTTACACAGCCAAT
TAGCACATATTCTTGAAATTTTTGGTGAAAATGGAAAAGCCTCTTTATAA
AATTTTCCAAGACAGGAATCCGTCTACAGCGGAAGATATTTTGAAAAGAG
CTGTTAAAAATGAACAATAAGCAAAGCAAAAACCCAAACATCATTTGAAT
GTTGTGCCGCTTTGCCTGCATTTATTATATGAAAAGTAACTTAAAATACA
ATCCCAAATCAAATCTCAGGTTGGGGCAAGACAAGCAACCCAGGGATGGT
GAACAACATTCTCCAACAACTTCCAATGACAGTACAAAACAAAACACGAT
GTTCAACAATGAACAGCAAATATGCACCGTTGACTGATCAAATGTTGTGT
GCAGCCAATACTGAAGCCGTAGAGAATCAATCAGGTATCGTAATGCTTTC
AGCCACCCACTTCTCACAGACCCGGTAGGATTTTTTCAGCCAGTGGGGAT
AAAAATAACGGACTAAAACTCGATGGGGATTGATATTCCTGTTTTTTATG
GCTGGGGGTTTCAATTATTTAGTTTTCAAGTGCAAGAAAATTCAGTGGGG
ATGAGATTCAAGAATCTCATAAAGAGAATGCCTTTTAAAAGAACTCTCAT
CAATCAAAATTTTACTTTTGTCACTTTTCCTTCTCTAGTTTGTCATGGAG
ATTCTGGCAGTCCGTTTGTTTGCCAAGAAAGCAATGGTTCATGGACATTA
CATGGTTCGGTGAGCTGGGGATCACCACAATGTGATATCAAAGATGCTTT
CACTGTCTTTGCAAGGATCAGTGAATTTAGAAACTGGATTGACCAAAATA
TAAAATAGAAATAACTGTTTTACTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003027XLOC_003027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005320-exon-sc0000052-1575043694:103845..104028TCONS_00005320-exon-sc0000052-1575043694:103845..104028Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1575043694:103195..103359TCONS_00005320-exon-sc0000052-1575043694:103195..103359Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1575043694:102750..102940TCONS_00005320-exon-sc0000052-1575043694:102750..102940Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1510915933:103845..104028TCONS_00005320-exon-sc0000052-1510915933:103845..104028Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1510915933:103195..103359TCONS_00005320-exon-sc0000052-1510915933:103195..103359Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1510915933:102750..102940TCONS_00005320-exon-sc0000052-1510915933:102750..102940Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1491911889:103845..104028TCONS_00005320-exon-sc0000052-1491911889:103845..104028Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1491911889:103195..103359TCONS_00005320-exon-sc0000052-1491911889:103195..103359Clytia hemisphaericaexon
TCONS_00005320-exon-sc0000052-1491911889:102750..102940TCONS_00005320-exon-sc0000052-1491911889:102750..102940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:102750..104028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.356192	0	0	0	0	0	0.111878	0	0	7.83845	8.34349	0.832118	2.68807	1.12647	0.708832	29.0297	28.093	5.71617	4.85412	5.63313	9.94587	11.4362	18.8535	0	0	2.9818	2.39311
Blast
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BLAST of TCONS_00005320 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.327e-29
Identity = 65/175 (37.14%), Postives = 94/175 (53.71%), Query Frame = 1 
Query:    7 QTIQVSNYIVHENYQNPRLSNDLALVQLEKPVIFGRNVQPICLPKQGERTDVGKKCYVTGWGKTSNPGMVNNI-LQQ--LPMTVQNKTRCSTMNSKY--APLTDQMLCAANTEAVENQSVCHGDSGSPFVCQESNGSWTLHGSVSWGSPQCDIKDAFTVFARISEFRNWIDQNIK 516
            Q + VS  I H ++ +  ++ND+ L++L  P  +   + P+CL    E    G  C  TGWG+ S  G V    LQQ  LP+   N+ R      +Y  + +TD M+CA    A    S C GDSG P VCQ+ N +W L G VSWG+  C+++ A  V+ R+S+F  WI+Q I 
Sbjct:  100 QVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCR------QYWGSSITDSMICAGGAGA----SSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQVIA 262
The following BLAST results are available for this feature:
BLAST of TCONS_00005320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL2.327e-2937.14Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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