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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004992 ID=TCONS_00004992|Name=TCONS_00004992|organism=Clytia hemisphaerica|type=transcript|length=2079bpRun BLAST on NCBI protein sequence of TCONS_00004992-protein >TCONS_00004992-protein ID=TCONS_00004992-protein|Name=TCONS_00004992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp MSRSSSTLPPLPGSPGVFNCKSEKKSESQKKMDITIHVCDEAKNLKKDFSRun BLAST on NCBI transcript from alignment at sc0000050:272284..291935+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004992 ID=TCONS_00004992|Name=TCONS_00004992|organism=Clytia hemisphaerica|type=transcript|length=19652bp|location=Sequence derived from alignment at sc0000050:272284..291935+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:272284..291935+ >TCONS_00004992 ID=TCONS_00004992|Name=TCONS_00004992|organism=Clytia hemisphaerica|type=CDS|length=17010bp|location=Sequence derived from alignment at sc0000050:272284..291935+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004992 vs. Swiss-Prot (Human)
Match: K1841 (Uncharacterized protein KIAA1841 OS=Homo sapiens GN=KIAA1841 PE=2 SV=2) HSP 1 Score: 322.013 bits (824), Expect = 1.437e-98 Identity = 163/323 (50.46%), Postives = 225/323 (69.66%), Query Frame = 1
Query: 175 DITIHVCDEAKNLKKDFSCPKSLLLEEMKYFQDYLSSDHQTWEDIDISVHCDVKIFDWLIRYVKRD-KENQD-SGPILSAKSAVSILISSEFLKMAKLVERCITFCHDHMSEIIASPCNMNCINDPLVKRISATFTQHDLEQVIXXXXXXXXXXXXXXIEELFNPNFSNEYSHNNASKLYKCLHCQKLLLPPVEQSIKCTVARTMIDHHGNLQYVHSRDTTWDVQEYLQNLKQQFKTWRSVFWRVWSVINFLQCNHCDEVFPVSDYNCCRYHPQQPIR-------NGTQAIAYPCCDQKSFHFEPIKSKNGCKFGNHQVSFKD 1116
++ IHVCDEAKNLK+DF+CP+ LL+ EMKYF +YLS D Q WE++DISVHCDV IF+WLI+Y+KR+ KEN+D P L + +SILISSEFLKM LVE+CI +CH +M+ I+A+PCNMNCIN L+ RI+ F+ ++++ + DKKDKFKSKLFCKKIE LF+P + N S +NA+ LY+C C+KLL E+ I C + +D GN+ Y+H RD TWDV EYL +L ++ K+WR V+WR+W IN+L C+ C + F +++ C+YH + + N YPCC+QK F+P + GCK +H V+ +D
Sbjct: 146 NMVIHVCDEAKNLKEDFTCPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYIKRNTKENKDCEMPTLEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVATPCNMNCINANLLTRIADLFSHNEVDDLKDKKDKFKSKLFCKKIERLFDPEYLNPDSRSNAATLYRCCLCKKLLTKETERRIPCIPGKINVDRRGNIVYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSETVVYPTAASSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVTLRD 468 The following BLAST results are available for this feature:
BLAST of TCONS_00004992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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