TCONS_00004950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004950
Unique NameTCONS_00004950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004950 ID=TCONS_00004950|Name=TCONS_00004950|organism=Clytia hemisphaerica|type=transcript|length=1051bp
TTATATGAAAATTGGTGCATTTATTCATAACataattactttcaaataat
cTTAAGCTGAACTCAATTGATTTGTCtctgttttcaattttgtatATTAA
AATGTGCTTAAAAgcgttattcttataaaagaacgtaCTTAAACTGTCTT
CATGGGTTAAATGATCGGGGTCTAATCATAAGAGTACTGTTTTTTAATGA
TACATCCAGTGTTTTCCAGCCACCCCACATGATTCCGTTTGCAAAACTAA
CTACTGCAGCATTGGTGCTATATTTTCCATTCATAGCCACAGCATGGCAC
CCTTTATGCCACCACGGTCCAAATGATTGTGCGCAATTCATAGTCGGGTG
AATATCATTTTCAACTTGCGCTGTGGAGAATTTGGAGCCGTGCATACTGC
CCATCCCGTACGGATAGTTTGGACTGAACTCTGTCAATTCCTCTTCGAAA
GTGATCATATAACCTTGCGACTCATCCTCCACTCTTACGCGTAGCATTTT
CTTCATGGCTTCAACACCATCATAACTTTTTGCCCAGACAAGATAATCAT
ACTTTTCTGAGGTAGTGAGTAAATTCAACCATTTGTTTCCTAGCCAAAAC
TCATTCTCAACGTCACCAAATCCCTCTCTATATGCAGCCCTTTCTTCGTT
AAAAAAGTCCACGCTGCCGTCAAATCTTCTTTGAAAGATCATCCATCCAC
CTCCATCTAGAACCATATTACAACGAACTTTCTTCCGAAACTTGCCCAAT
AAGTTGACTTCATACACACCGCTAGTACGCTCTCCTAATTTGTACCACTC
AGCGCAATCTTTTGGTAGAGCAATCGAATAGTACCTCACACCTGGATTAT
CAAGCAATGGTAACAAGGTGCTGTAGATCTGCTGGTAGAAACGACAACCA
GTGAAAATTGTAGATTGCCAGACTTCAAATGAAAAGCATTTTGATGAATA
ATGACAAACACTAAAGCATTTTTGATATGGAGCACCTTCAATAGAGTCGT
ATGGTGTCCCCGATATTGATTTCCCTGTTGCAATTAAGTCGTAGATTTCT
C
Run BLAST on NCBI

protein sequence of TCONS_00004950-protein

>TCONS_00004950-protein ID=TCONS_00004950-protein|Name=TCONS_00004950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
EIYDLIATGKSISGTPYDSIEGAPYQKCFSVCHYSSKCFSFEVWQSTIFT
GCRFYQQIYSTLLPLLDNPGVRYYSIALPKDCAEWYKLGERTSGVYEVNL
LGKFRKKVRCNMVLDGGGWMIFQRRFDGSVDFFNEERAAYREGFGDVENE
FWLGNKWLNLLTTSEKYDYLVWAKSYDGVEAMKKMLRVRVEDESQGYMIT
FEEELTEFSPNYPYGMGSMHGSKFSTAQVENDIHPTMNCAQSFGPWWHKG
CHAVAMNGKYSTNAAVVSFANGIMWGGWKTLDVSLKNSTLMIRPRSFNP
Run BLAST on NCBI

transcript from alignment at sc0000049:137354..138404

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004950 ID=TCONS_00004950|Name=TCONS_00004950|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0000049:137354..138404 (Clytia hemisphaerica)
GAGAAATCTACGACTTAATTGCAACAGGGAAATCAATATCGGGGACACCA
TACGACTCTATTGAAGGTGCTCCATATCAAAAATGCTTTAGTGTTTGTCA
TTATTCATCAAAATGCTTTTCATTTGAAGTCTGGCAATCTACAATTTTCA
CTGGTTGTCGTTTCTACCAGCAGATCTACAGCACCTTGTTACCATTGCTT
GATAATCCAGGTGTGAGGTACTATTCGATTGCTCTACCAAAAGATTGCGC
TGAGTGGTACAAATTAGGAGAGCGTACTAGCGGTGTGTATGAAGTCAACT
TATTGGGCAAGTTTCGGAAGAAAGTTCGTTGTAATATGGTTCTAGATGGA
GGTGGATGGATGATCTTTCAAAGAAGATTTGACGGCAGCGTGGACTTTTT
TAACGAAGAAAGGGCTGCATATAGAGAGGGATTTGGTGACGTTGAGAATG
AGTTTTGGCTAGGAAACAAATGGTTGAATTTACTCACTACCTCAGAAAAG
TATGATTATCTTGTCTGGGCAAAAAGTTATGATGGTGTTGAAGCCATGAA
GAAAATGCTACGCGTAAGAGTGGAGGATGAGTCGCAAGGTTATATGATCA
CTTTCGAAGAGGAATTGACAGAGTTCAGTCCAAACTATCCGTACGGGATG
GGCAGTATGCACGGCTCCAAATTCTCCACAGCGCAAGTTGAAAATGATAT
TCACCCGACTATGAATTGCGCACAATCATTTGGACCGTGGTGGCATAAAG
GGTGCCATGCTGTGGCTATGAATGGAAAATATAGCACCAATGCTGCAGTA
GTTAGTTTTGCAAACGGAATCATGTGGGGTGGCTGGAAAACACTGGATGT
ATCATTAAAAAACAGTACTCTTATGATTAGACCCCGATCATTTAACCCAT
GAAGACAGTTTAAGtacgttcttttataagaataacgcTTTTAAGCACAT
TTTAATatacaaaattgaaaacagaGACAAATCAATTGAGTTCAGCTTAA
gattatttgaaagtaattatGTTATGAATAAATGCACCAATTTTCATATA
A

Coding sequence (CDS) from alignment at sc0000049:137354..138404

>TCONS_00004950 ID=TCONS_00004950|Name=TCONS_00004950|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000049:137354..138404 (Clytia hemisphaerica)
GAAATCTACGACTTAATTGCAACAGGGAAATCAATATCGGGGACACCATA
CGACTCTATTGAAGGTGCTCCATATCAAAAATGCTTTAGTGTTTGTCATT
ATTCATCAAAATGCTTTTCATTTGAAGTCTGGCAATCTACAATTTTCACT
GGTTGTCGTTTCTACCAGCAGATCTACAGCACCTTGTTACCATTGCTTGA
TAATCCAGGTGTGAGGTACTATTCGATTGCTCTACCAAAAGATTGCGCTG
AGTGGTACAAATTAGGAGAGCGTACTAGCGGTGTGTATGAAGTCAACTTA
TTGGGCAAGTTTCGGAAGAAAGTTCGTTGTAATATGGTTCTAGATGGAGG
TGGATGGATGATCTTTCAAAGAAGATTTGACGGCAGCGTGGACTTTTTTA
ACGAAGAAAGGGCTGCATATAGAGAGGGATTTGGTGACGTTGAGAATGAG
TTTTGGCTAGGAAACAAATGGTTGAATTTACTCACTACCTCAGAAAAGTA
TGATTATCTTGTCTGGGCAAAAAGTTATGATGGTGTTGAAGCCATGAAGA
AAATGCTACGCGTAAGAGTGGAGGATGAGTCGCAAGGTTATATGATCACT
TTCGAAGAGGAATTGACAGAGTTCAGTCCAAACTATCCGTACGGGATGGG
CAGTATGCACGGCTCCAAATTCTCCACAGCGCAAGTTGAAAATGATATTC
ACCCGACTATGAATTGCGCACAATCATTTGGACCGTGGTGGCATAAAGGG
TGCCATGCTGTGGCTATGAATGGAAAATATAGCACCAATGCTGCAGTAGT
TAGTTTTGCAAACGGAATCATGTGGGGTGGCTGGAAAACACTGGATGTAT
CATTAAAAAACAGTACTCTTATGATTAGACCCCGATCATTTAACCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002798XLOC_002798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004950-proteinTCONS_00004950-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004950-exon-sc0000049-1491911889:137354..138404TCONS_00004950-exon-sc0000049-1491911889:137354..138404Clytia hemisphaericaexon
TCONS_00004950-exon-sc0000049-1510915933:137354..138404TCONS_00004950-exon-sc0000049-1510915933:137354..138404Clytia hemisphaericaexon
TCONS_00004950-exon-sc0000049-1575043694:137354..138404TCONS_00004950-exon-sc0000049-1575043694:137354..138404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:137354..138404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505621	0.369795	1.14498	0.980161	0.113643	0.224506	0.325028	0.405716	1.1007	0.395824	1.06721	1.09441	9.07936	7.85751	3.25389	3.18382	0.47446	1.13471	25.0379	19.0761	2.48505	2.20567	1.73921	3.38199	3.12146	3.02808	0.982185	0.369958	0.1403	0.0476478
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00004950 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.714e-32
Identity = 81/220 (36.82%), Postives = 119/220 (54.09%), Query Frame = -3 
Query:  168 PKDCAEWYKLGERTSGVYEVNLLGKFRKKVR--CNMVLDGGGWMIFQRRFDGSVDFFNEERAAYREGFGDVENEFWLGNKWLNLLTTSEKYDYLVWAKSYDGVE-AMKKMLRVRVEDESQGYMITFEEELTEFSPNYPYGMGSMHGSKFSTAQVENDIHPTMNCAQSF-GPWWHKGCHAVAMNGKYSTNAAVVSFANGIMWGGWKTLDVSLKNSTLMIRP 815
            P+DCA+    G+  SGVY + L G+  +K++  C+M  DGGGW++FQRR +G  DFF  + A YR GFG+VE+EFWLG   ++ +T+  +Y+  V  +  DG E A     R  VED    Y +     +  ++      +    G  FST   +ND+  T NCA S+ G WW+K CH   +NGKY  +      + GI W  WK  + S+    + +RP
Sbjct: 1135 PQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFF-RKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMR--DGQEAAFASYDRFSVEDSRNLYKL----RIGSYNGTAGDSLSYHQGRPFSTEDRDNDVAVT-NCAMSYKGAWWYKNCHRTNLNGKYGES----RHSQGINWYHWKGHEFSIPFVEMKMRP 1342
The following BLAST results are available for this feature:
BLAST of TCONS_00004950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR3.714e-3236.82Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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