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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004912 ID=TCONS_00004912|Name=TCONS_00004912|organism=Clytia hemisphaerica|type=transcript|length=577bp
cttttttggctGAGTATAATTGCTGTACTTAAGtgaaaatttagatttat
aactatttttgagatattttgtcGTATTTTAGTGTTCCAGACAGCGCAAT
GACACCCATTGAAAACGGCACCACCAAAACACAAGATAATTCCATCAATT
TCAACCTAGATGATTTGGAGATGTTTATGACAGATCAAATGTCCAAAGCT
CTACCAACTCCTGTCCAAGAAAAAGAACCATCAACCAAGTCAACAGACAG
TGAAAAaccaaagaagaaaaagaagaagaaaacctCAGTTACTGCTGACA
CGACCcctTCGGATCCTGTTACAAcaacagaaaagaaaaagaagaagaaa
acgaaagtgaaagtagaaGAAAACGGCGAAGGAGGAGGAGAACCTACTCC
AACAAAAAGTAAAACGAAGAAGAGCAAGAAGTTGGAGGGTGCTGATGGAA
ACACAGAAACGTctacgaagaagaaaaaatctagCAAAAAGAAGACTAGC
ACTCCTGAAAATGAGTTGGACGCTTTCTTTGCCTCATGAAAGAAGATTTC
CTCCCTTTCCGTAGCGGTAAAAAGTAA Run BLAST on NCBI protein sequence of TCONS_00004912-protein >TCONS_00004912-protein ID=TCONS_00004912-protein|Name=TCONS_00004912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MTPIENGTTKTQDNSINFNLDDLEMFMTDQMSKALPTPVQEKEPSTKSTD
SEKPKKKKKKKTSVTADTTPSDPVTTTEKKKKKKTKVKVEENGEGGGEPT
PTKSKTKKSKKLEGADGNTETSTKKKKSSKKKTSTPENELDAFFAS Run BLAST on NCBI transcript from alignment at sc0000049:364140..365223- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004912 ID=TCONS_00004912|Name=TCONS_00004912|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at sc0000049:364140..365223- (Clytia hemisphaerica)
CTTTTTTGGCTGAGTATAATTGCTGTACTTAAGTGAAAATTTAGATTTAT
AACTATTTTTGAGATATTTTGTCGTATTTTAGTGTTCCAGACAGCGCAAT
GACACCCATTGAAAACGGCACCACCAAAACACAAGATAATTCCATCAATT
TCAACCTAGATGATTTGGAGATGTTTATGACAGATCAAATGTCCAAAGCT
CTACCAACTCCTGTCCAAGAAAAAGGTTTTCCTTTATAGAATGAATTTTA
CTGGATGCTTTTACATAAGTTTTTTCATAAGTTTTTTCAGGAACTTCTTC
GAAAAGAGGCCATAATTTTATAAAGTCTTTGTCTACGAAACTTTAGCCTG
CGAAACTTTTGTCTGCGAAACTTTGACCTTTAAAATAGTTATCCTTTGAC
GGAGGAAAAACTAATATATCGACTTGATTGTATGTTTACACCTCACACCT
CACTCTTTTTTCACAGAACCATCAACCAAGTCAACAGACAGTGAAAAACC
AAAGAAGAAAAAGAAGAAGAAAACCTCAGTTACTGCTGACACGACCGTAA
TATTTAGTTATCTTTGGATTTTGTTAGATGAATCCGTATTTCTTTTTAAT
ATGACATTTTCGCAAAAACATTTGGCAGTCATTATTGATAAAACCTCTTA
AAAATACCTTCAATTGTCAAATATAAACAACTTGAATCTCAATTGGACAT
TCCTCTTTGGTGATAGTGTTCTTTTTAGAGTAAATTGTAAGCCAGCTACC
ATAGCTACTTTTACTGGAACCATCTTTGAAATGTGGATTCCAATAATTTC
AATTTTTTCTAGCCTTCGGATCCTGTTACAACAACAGAAAAGAAAAAGAA
GAAGAAAACGAAAGTGAAAGTAGAAGAAAACGGCGAAGGAGGAGGAGAAC
CTACTCCAACAAAAAGTAAAACGAAGAAGAGCAAGAAGTTGGAGGGTGCT
GATGGAAACACAGAAACGTCTACGAAGAAGAAAAAATCTAGCAAAAAGAA
GACTAGCACTCCTGAAAATGAGTTGGACGCTTTCTTTGCCTCATGAAAGA
AGATTTCCTCCCTTTCCGTAGCGGTAAAAAGTAA Coding sequence (CDS) from alignment at sc0000049:364140..365223- >TCONS_00004912 ID=TCONS_00004912|Name=TCONS_00004912|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000049:364140..365223- (Clytia hemisphaerica)
CCTTCGGATCCTGTTACAACAACAGAAAAGAAAAAGAAGAAGAAAACGAA
AGTGAAAGTAGAAGAAAACGGCGAAGGAGGAGGAGAACCTACTCCAACAA
AAAGTAAAACGAAGAAGAGCAAGAAGTTGGAGGGTGCTGATGGAAACACA
GAAACGTCTACGAAGAAGAAAAAATCTAGCAAAAAGAAGACTAGCACTCC
TGAAAATGAGTTGGACGCTTTCTTTGCCTCATGAAACCATCAACCAAGTC
AACAGACAGTGAAAAACCAAAGAAGAAAAAGAAGAAGAAAACCTCAGTTA
CTGCTGACACGACCATGACACCCATTGAAAACGGCACCACCAAAACACAA
GATAATTCCATCAATTTCAACCTAGATGATTTGGAGATGTTTATGACAGA
TCAAATGTCCAAAGCTCTACCAACTCCTGTCCAAGAAAAAGCCTTCGGAT
CCTGTTACAACAACAGAAAAGAAAAAGAAGAAGAAAACGAAAGTGAAAGT
AGAAGAAAACGGCGAAGGAGGAGGAGAACCTACTCCAACAAAAAGTAAAA
CGAAGAAGAGCAAGAAGTTGGAGGGTGCTGATGGAAACACAGAAACGTCT
ACGAAGAAGAAAAAATCTAGCAAAAAGAAGACTAGCACTCCTGAAAATGA
GTTGGACGCTTTCTTTGCCTCATGAAACCATCAACCAAGTCAACAGACAG
TGAAAAACCAAAGAAGAAAAAGAAGAAGAAAACCTCAGTTACTGCTGACA
CGACCATGACACCCATTGAAAACGGCACCACCAAAACACAAGATAATTCC
ATCAATTTCAACCTAGATGATTTGGAGATGTTTATGACAGATCAAATGTC
CAAAGCTCTACCAACTCCTGTCCAAGAAAAAGCCTTCGGATCCTGTTACA
ACAACAGAAAAGAAAAAGAAGAAGAAAACGAAAGTGAAAGTAGAAGAAAA
CGGCGAAGGAGGAGGAGAACCTACTCCAACAAAAAGTAAAACGAAGAAGA
GCAAGAAGTTGGAGGGTGCTGATGGAAACACAGAAACGTCTACGAAGAAG
AAAAAATCTAGCAAAAAGAAGACTAGCACTCCTGAAAATGAGTTGGACGC
TTTCTTTGCCTCATGAAACCATCAACCAAGTCAACAGACAGTGAAAAACC
AAAGAAGAAAAAGAAGAAGAAAACCTCAGTTACTGCTGACACGACCATGA
CACCCATTGAAAACGGCACCACCAAAACACAAGATAATTCCATCAATTTC
AACCTAGATGATTTGGAGATGTTTATGACAGATCAAATGTCCAAAGCTCT
ACCAACTCCTGTCCAAGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004912-exon-sc0000049-1575043694:364999..365223 | TCONS_00004912-exon-sc0000049-1575043694:364999..365223 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1575043694:364678..364757 | TCONS_00004912-exon-sc0000049-1575043694:364678..364757 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1575043694:364140..364411 | TCONS_00004912-exon-sc0000049-1575043694:364140..364411 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1510915933:364999..365223 | TCONS_00004912-exon-sc0000049-1510915933:364999..365223 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1510915933:364678..364757 | TCONS_00004912-exon-sc0000049-1510915933:364678..364757 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1510915933:364140..364411 | TCONS_00004912-exon-sc0000049-1510915933:364140..364411 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1491911889:364999..365223 | TCONS_00004912-exon-sc0000049-1491911889:364999..365223 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1491911889:364678..364757 | TCONS_00004912-exon-sc0000049-1491911889:364678..364757 | Clytia hemisphaerica | exon |
| TCONS_00004912-exon-sc0000049-1491911889:364140..364411 | TCONS_00004912-exon-sc0000049-1491911889:364140..364411 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:364140..365223 - |
Blast
The following BLAST results are available for this feature:
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