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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004830 ID=TCONS_00004830|Name=TCONS_00004830|organism=Clytia hemisphaerica|type=transcript|length=1948bp
GAATATAAAAAAACCATCTccaattaaaaatttacattctACTTTCTTCC
TCGTTCGGTTTAAGGAGATTCTTACTATTCGATTGAAAAGTCTTTTGTTG
AATGTATGccaaggtatttttctccttcttAAAGAGAACAATAAAAAGTT
TCTTGCCATAACATAATAAGATGTAAATACTCGAATTCAACGAGATGGCA
AGCCACATGATTGATGCTTGGAAATGTGGATCTTGACTTTTGAATCTTAG
CAAAATAAACATGACTGCAAAAGACATATTTGACGCAAAAGACGCATACA
ATAAAGACATTGATTCGTTGAAAATGTCCggcaaatttcttcctttgtat
GCTATAATAAATGTAGCCACTTGTAAAAGACCTGCAAATCCAAGTTGAAT
CGTTTTTGGTAGCATATTCCTACAAAATAGATGTATGATTTTGtataaaa
tttttcttcgaGATTGAACGGTAACGGGCTGCGTTTCCATAGCAACAATG
GTCAAAACAACTGAAGATATGGTCAAAATGAGAATTGTAAACCATTGCTG
GAGAatggtgtttcttttgttttttgctGACAATTTGTGCATTGAGTTGA
AAGCAGTCAATATCTTATGTGACTTCATTAGGACTATTGCAATGAAAAAG
GTGTATAAATTCCCGGCAACAATGGTGTCAAAGAAGCAGGTGAACTTTCT
TGGTTTCGTATGTGGTGATATCACTGAAACTGCATTGATCAAAATNGGTG
AACTTTCTTGGTTTCATATGTGGTGATATCACTGAAACTGCACTGATCAA
AATTGAGGTAAACAAATGAATTATAGTCAGTATAAAATCTGAGCTTTTAA
CAATAGGTGTTTTGTGATATATGATAAAGATGATCAATGTTAACACACAA
AATGCAAGATTAAAACCGGCTAATCCAAAAGCCGTGAAAAAGATGGTGCT
TTTGACAAAATATTCCTGACGGTATGGGTCAAAACATTTGTCGTGTtttt
cgttggaaagataataacgaggacatttttgacatttttcatcGTTCCCT
TTAttcaatttgataaaatttcgtTGACATTGCTTACAAGTGAAACCATA
TTCGAAATTCCATTTCGTGAATTGTTTCAAACGTTTTCCTCTGCTTTCTT
CCCAGCCTGAAGAACATTGATATGATTGGCATGTAGTTTCAATTGAAGCA
TCTATTAATGCCGTGCCGATTGAATTTTTCAGATCTTCCACCAAATTTTC
TGCGTCAAGGAAATTCATTGTATTTCTATATAAAATATTACTCTTTCTTA
TCCAGACCTCACACCTATTTTTAAAGGGAAATCTTAATGCTGAGTTTATC
CGGGATCTTTTCGCTCCTTCCTTACCAAATCTCTCGAATATCTTATCAAA
TATGGCAAATGCTATTTCGACCACCGTTCTATTTTGTTCTGATTGTTTTT
CAAATAGAGATAtttggtttttaaatttttcatggtTTTTGATGATTAAT
TGACGTATGTTAGTTTCATAGCTTAAAATGTTGACATTATCTCCTCCATC
GAATGGGAAAGATGAATCTATCATAGATGCTGGTAAGTCATGCGTAAACC
AGataaaatttgtataaaaatttttgttgacAGTTTGAACAAATTTCATT
TGATCGTTTGGGCTTCCAAAAAGCACCAAAACATTGTACGATAAATCTCG
ATGTAAAATGTCAACAGCCCTGGTAAAGTTGGCGGAATTGAGAATGTCAA
TAGTATCTGTAAAATAGCAAGTATCAGAAAGGTCTTGTTGGCTTATTGTG
TCAATGAACCTTTGGTGCATTTTAGAGTAATATTCACTAGAATCTCTTTC
TAATCCTTTTAAAAGTAATAATCCGAAACGCTTCCAACTGAAGATTTCAA
TGTGCTTAGCAAAAATCTTCGATTCTAGCTCTAAGGAGTCAAATAAAT Run BLAST on NCBI protein sequence of TCONS_00004830-protein >TCONS_00004830-protein ID=TCONS_00004830-protein|Name=TCONS_00004830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
LFDSLELESKIFAKHIEIFSWKRFGLLLLKGLERDSSEYYSKMHQRFIDT
ISQQDLSDTCYFTDTIDILNSANFTRAVDILHRDLSYNVLVLFGSPNDQM
KFVQTVNKNFYTNFIWFTHDLPASMIDSSFPFDGGDNVNILSYETNIRQL
IIKNHEKFKNQISLFEKQSEQNRTVVEIAFAIFDKIFERFGKEGAKRSRI
NSALRFPFKNRCEVWIRKSNILYRNTMNFLDAENLVEDLKNSIGTALIDA
SIETTCQSYQCSSGWEESRGKRLKQFTKWNFEYGFTCKQCQRNFIKLNKG
NDEKCQKCPRYYLSNEKHDKCFDPYRQEYFVKSTIFFTAFGLAGFNLAFC
VLTLIIFIIYHKTPIVKSSDFILTIIHLFTSILISAVSVISPHMKPRKFT
XFDQCSFSDITTYETKKVHLLL Run BLAST on NCBI transcript from alignment at sc0000048:662618..664565 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004830 ID=TCONS_00004830|Name=TCONS_00004830|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at sc0000048:662618..664565 (Clytia hemisphaerica)
ATTTATTTGACTCCTTAGAGCTAGAATCGAAGATTTTTGCTAAGCACATT
GAAATCTTCAGTTGGAAGCGTTTCGGATTATTACTTTTAAAAGGATTAGA
AAGAGATTCTAGTGAATATTACTCTAAAATGCACCAAAGGTTCATTGACA
CAATAAGCCAACAAGACCTTTCTGATACTTGCTATTTTACAGATACTATT
GACATTCTCAATTCCGCCAACTTTACCAGGGCTGTTGACATTTTACATCG
AGATTTATCGTACAATGTTTTGGTGCTTTTTGGAAGCCCAAACGATCAAA
TGAAATTTGTTCAAACTgtcaacaaaaatttttatacaaattttatCTGG
TTTACGCATGACTTACCAGCATCTATGATAGATTCATCTTTCCCATTCGA
TGGAGGAGATAATGTCAACATTTTAAGCTATGAAACTAACATACGTCAAT
TAATCATCAAAAaccatgaaaaatttaaaaaccaaaTATCTCTATTTGAA
AAACAATCAGAACAAAATAGAACGGTGGTCGAAATAGCATTTGCCATATT
TGATAAGATATTCGAGAGATTTGGTAAGGAAGGAGCGAAAAGATCCCGGA
TAAACTCAGCATTAAGATTTCCCTTTAAAAATAGGTGTGAGGTCTGGATA
AGAAAGAGTAATATTTTATATAGAAATACAATGAATTTCCTTGACGCAGA
AAATTTGGTGGAAGATCTGAAAAATTCAATCGGCACGGCATTAATAGATG
CTTCAATTGAAACTACATGCCAATCATATCAATGTTCTTCAGGCTGGGAA
GAAAGCAGAGGAAAACGTTTGAAACAATTCACGAAATGGAATTTCGAATA
TGGTTTCACTTGTAAGCAATGTCAacgaaattttatcaaattgaaTAAAG
GGAACgatgaaaaatgtcaaaaatgtcctcgttattatctttccaacgaa
aaACACGACAAATGTTTTGACCCATACCGTCAGGAATATTTTGTCAAAAG
CACCATCTTTTTCACGGCTTTTGGATTAGCCGGTTTTAATCTTGCATTTT
GTGTGTTAACATTGATCATCTTTATCATATATCACAAAACACCTATTGTT
AAAAGCTCAGATTTTATACTGACTATAATTCATTTGTTTACCTCAATTTT
GATCAGTGCAGTTTCAGTGATATCACCACATATGAAACCAAGAAAGTTCA
CCNATTTTGATCAATGCAGTTTCAGTGATATCACCACATACGAAACCAAG
AAAGTTCACCTGCTTCTTTGACACCATTGTTGCCGGGAATTTATACACCT
TTTTCATTGCAATAGTCCTAATGAAGTCACATAAGATATTGACTGCTTTC
AACTCAATGCACAAATTGTCagcaaaaaacaaaagaaacaccatTCTCCA
GCAATGGTTTACAATTCTCATTTTGACCATATCTTCAGTTGTTTTGACCA
TTGTTGCTATGGAAACGCAGCCCGTTACCGTTCAATCtcgaagaaaaatt
ttataCAAAATCATACATCTATTTTGTAGGAATATGCTACCAAAAACGAT
TCAACTTGGATTTGCAGGTCTTTTACAAGTGGCTACATTTATTATAGCat
acaaaggaagaaatttgccGGACATTTTCAACGAATCAATGTCTTTATTG
TATGCGTCTTTTGCGTCAAATATGTCTTTTGCAGTCATGTTTATTTTGCT
AAGATTCAAAAGTCAAGATCCACATTTCCAAGCATCAATCATGTGGCTTG
CCATCTCGTTGAATTCGAGTATTTACATCTTATTATGTTATGGCAAGAAA
CTTTTTATTGTTCTCTTTaagaaggagaaaaataccttggCATACATTCA
ACAAAAGACTTTTCAATCGAATAGTAAGAATCTCCTTAAACCGAACGAGG
AAGAAAGTagaatgtaaatttttaattggAGATGGTTTTTTTATATTC Coding sequence (CDS) from alignment at sc0000048:662618..664565 >TCONS_00004830 ID=TCONS_00004830|Name=TCONS_00004830|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000048:662618..664565 (Clytia hemisphaerica)
TTATTTGACTCCTTAGAGCTAGAATCGAAGATTTTTGCTAAGCACATTGA
AATCTTCAGTTGGAAGCGTTTCGGATTATTACTTTTAAAAGGATTAGAAA
GAGATTCTAGTGAATATTACTCTAAAATGCACCAAAGGTTCATTGACACA
ATAAGCCAACAAGACCTTTCTGATACTTGCTATTTTACAGATACTATTGA
CATTCTCAATTCCGCCAACTTTACCAGGGCTGTTGACATTTTACATCGAG
ATTTATCGTACAATGTTTTGGTGCTTTTTGGAAGCCCAAACGATCAAATG
AAATTTGTTCAAACTgtcaacaaaaatttttatacaaattttatCTGGTT
TACGCATGACTTACCAGCATCTATGATAGATTCATCTTTCCCATTCGATG
GAGGAGATAATGTCAACATTTTAAGCTATGAAACTAACATACGTCAATTA
ATCATCAAAAaccatgaaaaatttaaaaaccaaaTATCTCTATTTGAAAA
ACAATCAGAACAAAATAGAACGGTGGTCGAAATAGCATTTGCCATATTTG
ATAAGATATTCGAGAGATTTGGTAAGGAAGGAGCGAAAAGATCCCGGATA
AACTCAGCATTAAGATTTCCCTTTAAAAATAGGTGTGAGGTCTGGATAAG
AAAGAGTAATATTTTATATAGAAATACAATGAATTTCCTTGACGCAGAAA
ATTTGGTGGAAGATCTGAAAAATTCAATCGGCACGGCATTAATAGATGCT
TCAATTGAAACTACATGCCAATCATATCAATGTTCTTCAGGCTGGGAAGA
AAGCAGAGGAAAACGTTTGAAACAATTCACGAAATGGAATTTCGAATATG
GTTTCACTTGTAAGCAATGTCAacgaaattttatcaaattgaaTAAAGGG
AACgatgaaaaatgtcaaaaatgtcctcgttattatctttccaacgaaaa
ACACGACAAATGTTTTGACCCATACCGTCAGGAATATTTTGTCAAAAGCA
CCATCTTTTTCACGGCTTTTGGATTAGCCGGTTTTAATCTTGCATTTTGT
GTGTTAACATTGATCATCTTTATCATATATCACAAAACACCTATTGTTAA
AAGCTCAGATTTTATACTGACTATAATTCATTTGTTTACCTCAATTTTGA
TCAGTGCAGTTTCAGTGATATCACCACATATGAAACCAAGAAAGTTCACC
NATTTTGATCAATGCAGTTTCAGTGATATCACCACATACGAAACCAAGAA
AGTTCACCTGCTTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004830-exon-sc0000048-1491911889:662618..664565 | TCONS_00004830-exon-sc0000048-1491911889:662618..664565 | Clytia hemisphaerica | exon |
| TCONS_00004830-exon-sc0000048-1510915933:662618..664565 | TCONS_00004830-exon-sc0000048-1510915933:662618..664565 | Clytia hemisphaerica | exon |
| TCONS_00004830-exon-sc0000048-1575043694:662618..664565 | TCONS_00004830-exon-sc0000048-1575043694:662618..664565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:662618..664565 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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