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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004617 ID=TCONS_00004617|Name=TCONS_00004617|organism=Clytia hemisphaerica|type=transcript|length=2124bp
AAAACCAGGAAGCCAAATCATCAAATCTAGTTATGTATGAAATAAAACAC
TTTCTCGGATACTTGGTACTATCGTTATTATAAGCAGCAACATCCAAATA
TGTTTGCAAGGGCACCTTTTCCCTATCGGTTCCATACCAGGAGGGGACGG
TCTCGACGCCGACATGGTAAACCTGAGACCAACAGGAATATCCCGTCCGC
TTTCTTTGGTCTGGTTGTGACTGGACTATATGCTATTACAATGGCCGAGC
CAAACTGGTTTGAATTGGATGGTGGAATTTGTTCTGGACGACATATTGGC
TTATATACAATATTTGGGATGAATATTCGATTAATTAAAGGGAAATGTAT
AACAGATGGCGTGATTCTGAAATTGCGTTTGTGTGCATCGTTCGCTTTGC
TGGGTGTCATCAGCAGTATGTTTCAATTCGCTCTGGACGTATGTGGAAGC
AATCGAACTGGTCTCAAATGTTTAAGAAGAAACTCTattggaaatatttt
gtcaGTTTTGTACTCTGTGGTCATTCTTGGGCTAAGTTATTGGATTACAT
TGGATATCAGTCAACTCGAACTAAAAACATATACTGGCGAAATAATACCG
ATCAGTTGTAAATTTGCTGTGGCTTTTTATTTGGTGATTGGTGCTGGGCT
GGCGGCTTTGATTGCAACAACATTTAGTTTAATGGAGATTACTTGTGAAA
GAAGAAGACGCCAACACCGAGATAGGCGTATATTGAATGGTAGTGATATG
CAGTTAGAATTGATTTGTGACGGAACTGAGGAGAGTAGTATGACCGTATT
TGATGATCTACCTCCAGTAGCGCCGCCTATGTACCAGGAATGATGATTTC
TGGTGTGTTGTATCTTGAGTTGTTGGaaccacagatttataaagccagAA
GGCTAGATgccgtgctttaagccatcacaggcaaaaaaaagttaatGTAG
GAAAAATagtgttgctattgttttcgaaaacccgcgaagcttttgattgg
tcaagcgcttaAATTCTactgtaatgtcacgtgacttaggtaggatttcc
tacctaaccacggcacacttttcagcaaaagtacgccatctagcccttgg
GGCTTCATAAATCTATGGTTGGAACTTGTGCTTGTCGCTGCTTGGTGCGG
TGGTATTCATAACACACTGATCACACCGTACAGTAAACATGCCCGAAAAA
ATCGAGTGCTTTCTACGCTTATTAAAAATTCGCGTCAATAAAAATTTATG
ACAGGCACTCGATTTTTCAAGGTTGTTTTTGTATTGTGTCATGGATATTA
TAATTCTTTGTGAAACTTGAAAGGATATTTTTTACATTTGGGTACCAAAC
TCTTAGATTCTACGAATCAGTTCTTTCGTAAGAAAACTTTTGTTATTTCG
TTGGTTCGATGTTGTTCTTCTTCTGTTCATAtttcttttgacttttaaaa
agtatgttttaaaatggaaacagttttttaaaatattacgACACCGATAA
ACATCTAATGGGCCGCGTAATATTTTTTTactgttcttaaaatctttGTG
TGACAAAATGTAAATCGCTTGTCTTTGTGATTTTGCAAAAGTTATCTGAT
AATGAATTTCTGTTTCATAAATCTTTGTGGTGTTGATTCACCAATCTTGA
CTATTCCTTATCGTTTTGTTTTGGTTCGTCATACGCACACACACTCACAA
CATAGTGATGTATAATGTACATCACTGAACTCGAAAGTAATGTCTAATGA
CTGTAGTGACCATAATTCACAAAATCTACGTCGTATGAAATTTTCTTATC
AAATTATCAAAGTGACAACGACACAGATTGTGCGGTGCTCATATCGAAGC
ATCACCATGAGTTATCGAAAGTTCAAAAGGCGTTTATTTTCGAGTTGCGt
tatatttcaattttgttttgctttcaAACTGTAAATAGATTGTTTTGATA
CTACTACgagaaaaattatataaagtaaagcaataagtttttttttattc
tatattgttatattaaaaaaggaaattcgCACAGCATTTAAATTTTCTAA
TAAACGTTTATGGAGTCCGATTGCTTGAGAAGAATGAGTAGGGCTGAGTG
ACGTCATCCGATCCTTGTAAACTN Run BLAST on NCBI protein sequence of TCONS_00004617-protein >TCONS_00004617-protein ID=TCONS_00004617-protein|Name=TCONS_00004617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MFARAPFPYRFHTRRGRSRRRHGKPETNRNIPSAFFGLVVTGLYAITMAE
PNWFELDGGICSGRHIGLYTIFGMNIRLIKGKCITDGVILKLRLCASFAL
LGVISSMFQFALDVCGSNRTGLKCLRRNSIGNILSVLYSVVILGLSYWIT
LDISQLELKTYTGEIIPISCKFAVAFYLVIGAGLAALIATTFSLMEITCE
RRRRQHRDRRILNGSDMQLELICDGTEESSMTVFDDLPPVAPPMYQE Run BLAST on NCBI transcript from alignment at sc0000047:247706..258572+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004617 ID=TCONS_00004617|Name=TCONS_00004617|organism=Clytia hemisphaerica|type=transcript|length=10867bp|location=Sequence derived from alignment at sc0000047:247706..258572+ (Clytia hemisphaerica)
AAAACCAGGAAGCCAAATCATCAAATCTGTAAGAGTACACAGTACAGTAA
GAAAgcaataatttttatttaatttttttttaactacaATATACTAAGCT
TGAAGTATAGGTGTCCAGAAAATAGCAGAAATTCAGTCTACACACAGCAT
aataaaataatcaaagaaaaagtttttttatccaCTTTCAGTTTTCAGCA
CTTTTCAACCtacattttacttttttgctaaTGAACCTCTGCTATATCTC
TCAGGGTACTCAGCATGTCATtgtctttttaacttttgggGAGCACTtga
atgaatgacctggctggtcattaaaatacaaagttaaatcaaaacaaaaa
tgatataaGTAGAGCTGGGAGCGGCAGAGCTTGTgtagttttcttttgaa
attttgctgctttgattggtcgtgGCTTcctcataaagacgaaagacata
tCTGAACTTATTttgtactttccagtctcttgtttgtagtttttctgact
ttctgattCTATgcgagttattttctatgttttttaacTGACTGAATGAT
TTACCGAAAGATCGCCACCGGCagtcagtctaaacttaaactcctatatg
tatatcaggattagaaactaggctagtcttacctcttttatcttttcctt
tacaacaatatacaatgctgacaatagaccttttcgcctttgcgaaagta
tgcaaaacatatgcaaaaagaaagtataaattaaaaacttacatgcataa
ttggcattatattaaagtgtaatcttgtagaagaaagattaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctattcgg
ctgacggcaaattattctcctgggaatagagccgccaaatgatNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtctaatgattataatatttatttataa
gatgctttgttgtctttttaatctttgtgtaaacttgcatatgttttgca
tactttctaagggaatttcaccacggcaattcggccacctaaatttttgc
atacaattcaatatggcggacgcaaaggcgaaaaggtctataagtccaga
cagtgtcaatcgaacaacttcaaacaaaaattgcaatcgaaccaatcgaa
cgtaatcaaacacGATCGAATAATTTCGATTCGAACGTAAtggaatctca
atcgaacagccgattcctgggtaatattggattgtgttcgattgcgtttg
attaaTTGCGTaaggtttgattggttcgattgatagttatATGACcatgt
tcgattggtttgattgattgtcaattacattggattaatcttctaTTTCG
TTcaattacgattatgttcgatgagtttgattgcgattaaattaaattgg
atcactctgttagagctttttagcgtgggcgacCGAGCTCTTAAGTACta
taccaaagcgaataaaatctaatacaatcgtaatcgaatacaatcgaacg
taatcaaagcaattgaacagcaaatcctgggtaatattcgattgcgattc
gattgcgttcgacaatcgaattgcaattattcgattgcgttcaattgcgt
tcgattgattcggcgttcgattcgttcgattgacatcatCTGGATAAGTT
AAtacaacacatgtgtacatttacattgacaagtaatccctgagagaagt
ttatatcgaaatctgcaacaaaaacaaaagtggtctcttctactgattgc
ttcccgcCCAGCactccttcgcagctgtttatcaaatttccaccaatgag
gttgccgcatttcaaacggcctttctttttggcacccatgGCACATAGAT
GATCTAACCACTCTTATTTCTAAactcaattttaattttgatgttaTGGC
AATCACCAAAACCCTTATTTTGAAGGGGAAAAAACCATCCTTCAACttta
atcttgaaaattttcaggaacCAATTTACACTCCTACAGAGGCTTCTGTT
GGTGGCACTATGTTATACATTTCGAACAATTTCTCTTTTGAACCCCGCAA
AGATCTTGACTCTATGTTGTATTGCCCAACCTTTCTTGAATCTACTTTTG
CAGAAATGCTGCATCCAAATTCTACTAATACTATTGTTAGATCCATCTAT
AAACACCCTCTTTTTTTCGCTTGATGAATTCAATAAACTTCTTGAAGcac
ttttgaataaaatcaacaaagaaaataaacaaattcttttgctaggtgat
ttcaacattaatcttttgAATACTTCTTCTAATCCCAATATCTTATCTTA
TTCTTACTTGAACAACCTTGGATCACACTTTCTTATACCTAATATTTTTC
TTCCGACTCAAATTGACCACTCCATGACACttattgacaatattttttct
tcaatttctgaaAAGCGTACCTTTTCAGGATGTTGTTGCCAATGGCTTCA
ATGACTTTTTTAATTCTATTGCAGATACTGTCCGTTCCAAAATTGGTCCA
ACTTATCGTCACTTCTCTCACTATCTCAAAAATTGCATTAGGAACTCTAT
TTTTCTTGATCGTGTTAACCCTGCTGAAGTTTTACTAACAATTAATTCTT
TATCTTTTAACAAATCATCTGGCCCTCATAGCATTTCCCCAAAAATTCTT
CGTCTTCTAAAGTTTGATCTCTCTTGACCCCTTTCTcttctttttaacct
ttcattTGAATCTGGTTGTTTTCCTACAATGCTTAATAAACTCTCAAAAG
TTATtcccattttcaaaaactaaggCTCTCCACTTGAAATATCCAATTAT
CACCCTATATCTCTCCTTTCCAACATAGAGAAAATTCTTGAGAAACTTAT
GTACTCTCGTCTTATTACTTTCTTAGATTCTCATGGAGTAGATCTATTTC
GTAGATCTCACTCAACCATCCATTCCTTACTTAATATTTTTGAACGTATT
CGGAAATCTCTTGATGATGGTAACTTTGTGTGtggtgtttttgttgattt
gcaaAAGGCTTTTGACACTGTTGATCATtctattttaatttcaaaactgg
ACCACTATGGGGTTAGAGGGAAGGCTAATGACTGGTTCAGATCATATTTA
TCTAACAGATCCCAGTTTGTCTCTATTTCATCTACAGTAATAAATCTTAT
ATTAAAATAATCCCTCATGGTGTTCCACAAGGCTCTGTTCTAGGACCTCT
CTTATTTTTAATCTATTATTAATGATCTTCACAATGCAATCTTTTCaagt
gaaacttttcatttcGCCGATGATAcccatattttacattttaatgatgA
TCTTCTTTCCCTTTGCAACAGAGTCAATCGTGACCTAAGATCCCTTCAAA
CTTGGCTCAAAGCCAATAAAATATCCATTAACGCtggaaaaacagaattt
ttaattttcatacactgtcgaaaaattcttccttttgtcccttttcttaa
aattggaggtaagaaaatttttcaaagttcaaatatcaaatatcttgGCG
TTTTGATTGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTGATTGACATGCACCTCA
ACTGGAAAGCCCACACCACATCTTTATCAGCTAAACTTGCCAGAGCAAAT
GGTATTATATCTAAGCTCAGGCActatgtttcaataaaaacctTAGTTAA
CATTTATTATGCTTAACAACTCTCGATGCCCCTCTTCTCCACTCTGCCTT
GGGAGATACTGAGCACACCCCTCCCCTACTAAGAAAGTTTagcaaacttt
cttttaatttattctTCATTAAGataacaaaattcttaaaaaaatataaa
catttatAAATGATTTACAAAGTGTTATAAACACAATCTGTACATATCAT
CACCTTGCATCTTTTCTGTAGtgttaaatggtaaataaatacttactaac
ttacttacttaggttttttctcatcttcaatttactgaagaaagcgggaa
tttgatgcaagagttagattgtcaacaaagtgccgtaaaaaatcattgaa
taaaagaagaatttaaaatcttaaatattttcattttgaagaatagaaaa
taaacatagaaaattttaatcTCCCATTTcaattaatgcaatgaaaaacg
aaacttttctgtgtttcacttttttgcacctattcttcaaaatgaaaatc
aggtAAATTTCCAGGATTTGGAGCTGCTACCGTTTTTAATCAAACAAAAG
ATTGAGTTTCAGAATGTGCCTTAGGCTCGAAAAAGCAGACAGGAGGTCTG
GGGCCTTGTAAACAGCCCCACTGGTCCAGGAGAGTCCTAGTGTGGTCTAT
GGGGCAGAGCCCCAAGAAAATTATGCCTTTTTGCAGAACTAAATGCTATA
ATATCAAATATTTGAAgacatttttcactcatttacCTTTTCCCATagct
aattttatttttcataaagattGATTTCCAAAACTCAATTAAAGATTCAG
TTGCTGCTACCGTTATCCGGTAGCAGaaaactctcgcatcaaattcccac
atcaaattcccgctttcttcagtaaattaaTAAtgacagtgctgcaaata
aagaaatttcagttggccggtaattttttgAGCGCAACGAAAATAATTTG
AGCAGGGGGTCTGGCAGAACCCCATTAGAAAAGTCTGAAATGACctttag
attggctaaacacctgtattaattcaaaatctattCCTCTTTTAATTGGA
AACGttattaagaatttatttaagcctctagttttttaattttaaccgga
caaaatgaaagattgagcttcagaatggccggtagaaactacgaaatgac
cggtaattacctgtcaccggccgttatttgcagcactgaatgagaaaaaa
cctaagccacagaatactgattgaaacaaatatatgaagggtggatATTT
ACAGCCCCTGTCAAAAGTGGTATCAGGTTCTTAAAAAGGGATATTTATAT
TAATTAATGTTGAAATATTGAagttactttaggcgtacaaactctcattt
tggcccttttcgcgaaagtaaatgtctttaaaaattgtaggaagtttatg
cttgcgaaaaattctcgacaaaatagaaaatctgtaaaacttcaaacttt
gaataaaatgtaacttttatggcactttttagcctgctaaaagactaata
agtcaaaggacaaatgtttcaagccaatctaAGAAGtctttgtccctcta
agccattttttcatgtgaaaattctcaattttgtcttgattcgcgaaagt
ttatgcttgcggaaaatatttttcagttaaatttgcgaaagtaaatgtcg
ggaattttgcaatttctcgtcctcgcaaaagtttgtacgcctaaggtaat
tttctcaagattcctgaactttaaaatataaattctattacaacaagaaa
ataaaagctcaacttaaattttgatggatcaTTATAAAAACTGGTCAATT
GGGTCAAATGTTACGCGCAAATCTATAACAAAAATTAACCCATCAAATTA
AAAACAGTAGCCCCTATTGCACAATACAacatttttttgattaaaaatga
caatgagctttcaaaatatcctttgttcaagaaaataaatattgatctca
aaataaaaaagggaaattcctaaAAAGTGCCATACATTTCATGAAACATT
GAAAGTAGTTAAACTTGGTGAATTCAGCATAATTTTGACTGTAAAGTGTA
AACAGTCATAAACctgaagtataagaaaaaattctgGAACAAGCAAATTA
AGATATTTTTGAAGAAGAAATTTACCCCTTTTTGAGGCTTCAGTTTCTGA
AATTATGTGTTAAAAATTGCAAATAGATTAAAAGCTCATTATCTTTAAAT
GAtactttattgtttttttactCATATTTTTAATTGGCACAGTGGGGGAA
AATTTTGTGCCAAGCTGAAACTTGCTCATAGTCTCAATAAAATAGACATA
GGTATGAATTTTAGGGCTACCACAAAAAGAAAAGCAGCcctatttttctg
aaaaaaaagctaatcattTGGCAGGGCAGGATAAGAACCATTTTACTTTA
CATATATACTAATACTATATACTATGGTATATACTAATTTTCTAAAGtag
aaacttttttcatttttgtaatttttttaacattatttgtTTGGTAAACA
AGTCATCACCAAAAAGTGCTCTATATTATATACTATATATACCAAAGATA
GAGCTTccattaataaaataaaatcatatATTTCTATGACAATTTGAAAG
TTTGCATAATTCAGAGTTTCATGGTCTCAGCAATTGTCAGATAGTTTTTT
AGCAAAcctttgaaaattctgaaaaagcaAGTTTGTGAAAGTTTTATGCT
CGTGAAAAATTAGAATCTGTAATGTTTTTAGCTGTCAAAGTGGAAGACTA
ACAGTTTTGATTGAATTACAGAAGTATTGGGTCACTTTGAAACCattctt
tgtttgaaaaatgcCATTGTTAATGTTAGGCGATTAATTAATGTGAAGGT
TTATGctcataataaatattttttactcCAATCTGCCTTTAAGCTTCTGT
TGTAAAGTTTTCGGTTCTTTGAAAGTGAAATCTTCatttgaaagtttctg
cttTCAGAAGTTTGTACACGTCGCCTTTTGGCCCAAAGTACCAAATAAAA
TTGAACAGCAGCTGAGCCCCAACAGAGAAGTTCTGGAGAACGctatatct
ttgtttttttttcctgtGAAATTATACCTTGTTTTGTTtggcattgtttt
attttttgagtaATTGAAAGTCATATATACTTCTAATTAAAACCAGTGTA
AATAAAGAGTAAAGGTTTCGATGGGAttgattaaaattaaaatttatttt
gggttatttttatgaaatgagctcttataaaaataaacacaTGACTAAAT
TAAAAGAGAGTGATTTTGGTATATGATAAATTTGATATGTAAGATTACGG
TTAGAATTATCATGTGTCACCATGCAATGTTATCGAtagattttaaacaa
ttttagaTTTCATAATAGAAAATATGCTCTGAAATACACACAACGCTATG
CTTATCAGCTATTTTAATGACCTCATTAGAAAGCTATATTTGATAAACCT
CGTTTGTGTAACATGCTTTATTAGATGTAATCACAATAATGTGTGTTGTT
TACATAATAATAACTATTTATTTTCTTAGAAGTCATTACTGCCTCATGAT
ATGATAGGATTTAGAAAACGTGATATCTTCTTTCGTTTTATAGAGTTATG
TATGAAATAAAACACTTTCTCGGATACTTGGTACTATCGTTATTATAAGC
AGCAACATCCAAATATGTTTGCAAGGGCACCTTTTCCCTATCGGTTCCAT
ACCAGGAGGGGACGGTCTCGACGCCGACATGGTAAACCTGAGACCAACAG
GAATATCCCGTCCGCTTTCTTTGGTCTGGTTGTGACTGGACTATATGCTA
TTACAATGGCCGAGCCAAACTGGTTTGAATTGGATGGTGGAATTTGTTCT
GGACGACATATTGGCTTATATACAATATTTGGGATGAATATTCGATTAAT
TAAAGGTATGGTTGGTAAAAAGTATCAAGATTTTTACGTTGAAGTCTCAA
CGAAATCATTTTACTTCATTGAGTCAAGTCAACCATATTTTGGACATAAA
TCTTAGTGTATCCGTATAATGTAAGAGTATGGATGGTTTTTCCACGAAGA
ATGAAGTTTAATTGGTAATTCTTCAATCTCTCTTTTTTTCAACTTCAGTT
TAAATCTAAATTCTTTCCAACTTTGGCTACATCTCTTCATCTCATTTTAG
ATCAGTTTAAAACCATCTATCTTATACGTACAGATTGGCTTTAAGTGATA
TGCTTTTTTATATCTTGAAGGGAAATGTATAACAGATGGCGTGATTCTGA
AATTGCGTTTGTGTGCATCGTTCGCTTTGCTGGGTGTCATCAGCAGTATG
TTTCAATTCGCTCTGGACGTATGTGGAAGCAATCGAACTGGTCTCAAATG
TTTAAGAAGAAACTCTattggaaatattttgtcaGGTGGGATCTGTGTTC
ATGCAACTCTTTCACGTGTGTtatcaaatttgaattttcaaccaatcaca
TGTGAAGGTTTTTATCCTTAATAAAATAACGGAAAATAgaagttgagaaa
aaaaaaacagactgCTAAAATAGATTCATGGCTTTTATGGTAGGTTACGT
GTTTTCTCGGGGAGGAAGTGAGTGATTGCAATCAGCCACCAAACAGagcc
ttttttggaaagttttaagAAATGAATAAACAAAGTGAAATTTCAGTAAC
ATCCAGGAGGGTTATGCAAtgatacacccctttctcacagaccctctTGG
ATTTTTGAGTCAGTGTGGGTAAAATAACAGACCAGGATTGATATATCCCT
ATGTTTTCCATGGCTGGGGAttcgaattccattgtttttgagaaaattca
ttTGAGATGGAAaagaatcaaaatattttgcagtgaggatttgctcaTCT
TATTACTTTCAATGGGGACAGAAATTTGAGtacaattttccactggggac
gatattttgtctaatttttcaagtgggtctgtgagaagggggtgtaataa
TGAATCTTTTATATCAATACCTGGTAATTATTTCATATTCCATTTCAGTT
TTGTACTCTGTGGTCATTCTTGGGCTAAGTTATTGGATTACATTGGATAT
CAGTCAACTCGAACTAAAAACATATACTGGCGAAATAATACCGATCAGTT
GTAAATTTGCTGTGGCTTTTTATTTGGTGATTGGTGCTGGGCTGGCGGCT
TTGATTGCAACAACATTTAGTTTAATGGAGATTACTTGTGAAAGAAGAAG
ACGCCAACACCGAGATAGGCGTATATTGAATGGTAGTGATATGCAGTTAG
AATTGATTTGTGACGGAACTGAGGAGAGTAGTATGACCGTATTTGATGAT
CTACCTCCAGTAGCGCCGCCTATGTACCAGGAATGATGATTTCTGGTGTG
TTGTATCTTGAGTTGTTGGaaccacagatttataaagccagAAGGCTAGA
TgccgtgctttaagccatcacaggcaaaaaaaagttaatGTAGGAAAAAT
agtgttgctattgttttcgaaaacccgcgaagcttttgattggtcaagcg
cttaAATTCTactgtaatgtcacgtgacttaggtaggatttcctacctaa
ccacggcacacttttcagcaaaagtacgccatctagcccttggGGCTTCA
TAAATCTATGGTTGGAACTTGTGCTTGTCGCTGCTTGGTGCGGTGGTATT
CATAACACACTGATCACACCGTACAGTAAACATGCCCGAAAAAATCGAGT
GCTTTCTACGCTTATTAAAAATTCGCGTCAATAAAAATTTATGACAGGCA
CTCGATTTTTCAAGGTTGTTTTTGTATTGTGTCATGGATATTATAATTCT
TTGTGAAACTTGAAAGGATATTTTTTACATTTGGGTACCAAACTCTTAGA
TTCTACGAATCAGTTCTTTCGTAAGAAAACTTTTGTTATTTCGTTGGTTC
GATGTTGTTCTTCTTCTGTTCATAtttcttttgacttttaaaaagtatgt
tttaaaatggaaacagttttttaaaatattacgACACCGATAAACATCTA
ATGGGCCGCGTAATATTTTTTTactgttcttaaaatctttGTGTGACAAA
ATGTAAATCGCTTGTCTTTGTGATTTTGCAAAAGTTATCTGATAATGAAT
TTCTGTTTCATAAATCTTTGTGGTGTTGATTCACCAATCTTGACTATTCC
TTATCGTTTTGTTTTGGTTCGTCATACGCACACACACTCACAACATAGTG
ATGTATAATGTACATCACTGAACTCGAAAGTAATGTCTAATGACTGTAGT
GACCATAATTCACAAAATCTACGTCGTATGAAATTTTCTTATCAAATTAT
CAAAGTGACAACGACACAGATTGTGCGGTGCTCATATCGAAGCATCACCA
TGAGTTATCGAAAGTTCAAAAGGCGTTTATTTTCGAGTTGCGttatattt
caattttgttttgctttcaAACTGTAAATAGATTGTTTTGATACTACTAC
gagaaaaattatataaagtaaagcaataagtttttttttattctatattg
ttatattaaaaaaggaaattcgCACAGCATTTAAATTTTCTAATAAACGT
TTATGGAGTCCGATTGCTTGAGAAGAATGAGTAGGGCTGAGTGACGTCAT
CCGATCCTTGTAAACTN Coding sequence (CDS) from alignment at sc0000047:247706..258572+ >TCONS_00004617 ID=TCONS_00004617|Name=TCONS_00004617|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000047:247706..258572+ (Clytia hemisphaerica)
ATGTTTGCAAGGGCACCTTTTCCCTATCGGTTCCATACCAGGAGGGGACG
GTCTCGACGCCGACATGGTAAACCTGAGACCAACAGGAATATCCCGTCCG
CTTTCTTTGGTCTGGTTGTGACTGGACTATATGCTATTACAATGGCCGAG
CCAAACTGGTTTGAATTGGATGGTGGAATTTGTTCTGGACGACATATTGG
CTTATATACAATATTTGGGATGAATATTCGATTAATTAAAGGGAAATGTA
TAACAGATGGCGTGATTCTGAAATTGCGTTTGTGTGCATCGTTCGCTTTG
CTGGGTGTCATCAGCAGTATGTTTCAATTCGCTCTGGACGTATGTGGAAG
CAATCGAACTGGTCTCAAATGTTTAAGAAGAAACTCTattggaaatattt
tgtcaGTTTTGTACTCTGTGGTCATTCTTGGGCTAAGTTATTGGATTACA
TTGGATATCAGTCAACTCGAACTAAAAACATATACTGGCGAAATAATACC
GATCAGTTGTAAATTTGCTGTGGCTTTTTATTTGGTGATTGGTGCTGGGC
TGGCGGCTTTGATTGCAACAACATTTAGTTTAATGGAGATTACTTGTGAA
AGAAGAAGACGCCAACACCGAGATAGGCGTATATTGAATGGTAGTGATAT
GCAGTTAGAATTGATTTGTGACGGAACTGAGGAGAGTAGTATGACCGTAT
TTGATGATCTACCTCCAGTAGCGCCGCCTATGTACCAGGAATGAATGTTT
GCAAGGGCACCTTTTCCCTATCGGTTCCATACCAGGAGGGGACGGTCTCG
ACGCCGACATGGTAAACCTGAGACCAACAGGAATATCCCGTCCGCTTTCT
TTGGTCTGGTTGTGACTGGACTATATGCTATTACAATGGCCGAGCCAAAC
TGGTTTGAATTGGATGGTGGAATTTGTTCTGGACGACATATTGGCTTATA
TACAATATTTGGGATGAATATTCGATTAATTAAAGGGAAATGTATAACAG
ATGGCGTGATTCTGAAATTGCGTTTGTGTGCATCGTTCGCTTTGCTGGGT
GTCATCAGCAGTATGTTTCAATTCGCTCTGGACGTATGTGGAAGCAATCG
AACTGGTCTCAAATGTTTAAGAAGAAACTCTattggaaatattttgtcaG
TTTTGTACTCTGTGGTCATTCTTGGGCTAAGTTATTGGATTACATTGGAT
ATCAGTCAACTCGAACTAAAAACATATACTGGCGAAATAATACCGATCAG
TTGTAAATTTGCTGTGGCTTTTTATTTGGTGATTGGTGCTGGGCTGGCGG
CTTTGATTGCAACAACATTTAGTTTAATGGAGATTACTTGTGAAAGAAGA
AGACGCCAACACCGAGATAGGCGTATATTGAATGGTAGTGATATGCAGTT
AGAATTGATTTGTGACGGAACTGAGGAGAGTAGTATGACCGTATTTGATG
ATCTACCTCCAGTAGCGCCGCCTATGTACCAGGAATGAATGTTTGCAAGG
GCACCTTTTCCCTATCGGTTCCATACCAGGAGGGGACGGTCTCGACGCCG
ACATGGTAAACCTGAGACCAACAGGAATATCCCGTCCGCTTTCTTTGGTC
TGGTTGTGACTGGACTATATGCTATTACAATGGCCGAGCCAAACTGGTTT
GAATTGGATGGTGGAATTTGTTCTGGACGACATATTGGCTTATATACAAT
ATTTGGGATGAATATTCGATTAATTAAAGGGAAATGTATAACAGATGGCG
TGATTCTGAAATTGCGTTTGTGTGCATCGTTCGCTTTGCTGGGTGTCATC
AGCAGTATGTTTCAATTCGCTCTGGACGTATGTGGAAGCAATCGAACTGG
TCTCAAATGTTTAAGAAGAAACTCTattggaaatattttgtcaGTTTTGT
ACTCTGTGGTCATTCTTGGGCTAAGTTATTGGATTACATTGGATATCAGT
CAACTCGAACTAAAAACATATACTGGCGAAATAATACCGATCAGTTGTAA
ATTTGCTGTGGCTTTTTATTTGGTGATTGGTGCTGGGCTGGCGGCTTTGA
TTGCAACAACATTTAGTTTAATGGAGATTACTTGTGAAAGAAGAAGACGC
CAACACCGAGATAGGCGTATATTGAATGGTAGTGATATGCAGTTAGAATT
GATTTGTGACGGAACTGAGGAGAGTAGTATGACCGTATTTGATGATCTAC
CTCCAGTAGCGCCGCCTATGTACCAGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004617-exon-sc0000047-1491911889:247706..247733 | TCONS_00004617-exon-sc0000047-1491911889:247706..247733 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1510915933:247706..247733 | TCONS_00004617-exon-sc0000047-1510915933:247706..247733 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1575043694:247706..247733 | TCONS_00004617-exon-sc0000047-1575043694:247706..247733 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1491911889:255549..255860 | TCONS_00004617-exon-sc0000047-1491911889:255549..255860 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1510915933:255549..255860 | TCONS_00004617-exon-sc0000047-1510915933:255549..255860 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1575043694:255549..255860 | TCONS_00004617-exon-sc0000047-1575043694:255549..255860 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1491911889:256176..256340 | TCONS_00004617-exon-sc0000047-1491911889:256176..256340 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1510915933:256176..256340 | TCONS_00004617-exon-sc0000047-1510915933:256176..256340 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1575043694:256176..256340 | TCONS_00004617-exon-sc0000047-1575043694:256176..256340 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1491911889:256954..258572 | TCONS_00004617-exon-sc0000047-1491911889:256954..258572 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1510915933:256954..258572 | TCONS_00004617-exon-sc0000047-1510915933:256954..258572 | Clytia hemisphaerica | exon |
| TCONS_00004617-exon-sc0000047-1575043694:256954..258572 | TCONS_00004617-exon-sc0000047-1575043694:256954..258572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:247706..258572 + |
Blast
BLAST of TCONS_00004617 vs. Swiss-Prot (Human)
Match: TM127 (Transmembrane protein 127 OS=Homo sapiens GN=TMEM127 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 9.645e-22 Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 175 ETNRNIPSAFFGLVVTGLYAITMAEPNWFELDGGICSGRHIGLYTIFG-MNIRLIKGKCITDGVILKLRLCASFALLGVISSMFQFALDVCGSNRTGLKCLRRNSIGNILSVLYSVVILGLSYWITLDI--SQLELKTYTGEIIPISCKFAVAFYLV 636
+ R++ SA G + +AEP W + GG CS + +G+ + G ++ L+K C+ +L LR+ A+F LG++ S+ F LDV G LK RR + +IL+VL ++G SYW + I Q + K Y G + ++ FAV+FYLV
Sbjct: 26 QPERSLASALPGALSITALCTALAEPAWLHIHGGTCSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKHPALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVT--FAVSFYLV 180
The following BLAST results are available for this feature:
|
