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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004468 ID=TCONS_00004468|Name=TCONS_00004468|organism=Clytia hemisphaerica|type=transcript|length=1393bp
TTCAAGCGCTTCTCATGTCTAATATTCTTTTTCAACCGACTACCAGAAGC
CAATGTGAATTCTGACACAAGAAGAATAGTCGAGTTTGTTTGATCCTTTG
GATGGTTAAAAGTTTGTCAAGTTCAAAGCAAAAAGTATAGAGAACGGCGT
GTTTAAACCATTTTTGTAAAGGTTTTGGCTACAATTCTGTCTTACATATT
GTGGAACTATGAATTTGTTGCAGTAAAAGACGGCTCATTGGTATAGTTCG
ATGTGCAGAAAAATAGATTCTTAAATGCCTGGCGTTAAAAAAAACACATC
TAGGATCGAAAGAGAGGGGatatcattattgtatttgttggAGTAGGACG
TTTGAAATTCAGTAATAAACAAGACTGTCTCTAAATTTGCACTCATGCGC
TCAAGTCAAAGACTTGATATGAGATTGTACTATTGAAGAGTTGATGACAA
AGACAATCGATTCTTAACGCTGGAAATTCAATGAAATACTGGACCCAAAT
TTGTGCTCAAAGACAAAAAACCCACAATGCATTGCATACTGAAGACAATG
TATGCTTTTTGTATACACTTTATTGTTTATTGGGTGTTCATACAGCCCTT
CATCGGCAAAGATTTCGAAGAAAATGAAGCAGTCAGTTACACCATTGGAG
CGTCTGTTATTGTCTGTGTTGCTTTCATCTCCAACATATATCTAATTGCT
GCTTTGCTGTTTGGGACAGACGGGGACCCTGAACGGTCACcagtttattt
tttcttcatcaatATAGCTCTAGCAGATTTGATTCAGGCGTGTGTTGTAT
TTCCCTTAAATATGTatgagaaaatagcatttttatcCATCGATTTCGAC
AAAATGGATGATTTATCACGTGTCATTAAACTGGTGCGCGAGTTTGAGTT
TCTGAGTGGGATTCTAAACGGAGCTAGTTTAGCAATGTTATGTTTTGCGT
CAATGATACGAACATGGGATAACTTACCACGCTGCACAAACCGATCTGTA
ACCTTATTCATACAATTGGCGTGGCTTTATACTGTTATATGTTTCACGTA
TGATGCAGTGTACTGGCTTGATAGTACATCTGTGTGGAGTACGCAACATT
CAGCGACTTACAGCTCTACGGTGGAGTTTTTCGTTCCTCTTACCATAAGT
TTATTCTCCATCATAGTTGCTTTTATTATCGAACACAGACGAGCGCCTGA
GAATCTCATCATGGAAAAAGATGTTAAACAGAAGGTTTTAGTGAGCTTGA
CTCTGTTATTCATAATTTTTCGAGCACCATCTTGTGTGTTGAATTTGGTT
AAGCAAGGCAAAACAAATAATTCTTTTAATATTAAGAAAATAACAAGAAT
CGTTTTGAACCTATACAGCTTAAAATGTTGCATTAACCCGATT Run BLAST on NCBI protein sequence of TCONS_00004468-protein >TCONS_00004468-protein ID=TCONS_00004468-protein|Name=TCONS_00004468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MHCILKTMYAFCIHFIVYWVFIQPFIGKDFEENEAVSYTIGASVIVCVAF
ISNIYLIAALLFGTDGDPERSPVYFFFINIALADLIQACVVFPLNMYEKI
AFLSIDFDKMDDLSRVIKLVREFEFLSGILNGASLAMLCFASMIRTWDNL
PRCTNRSVTLFIQLAWLYTVICFTYDAVYWLDSTSVWSTQHSATYSSTVE
FFVPLTISLFSIIVAFIIEHRRAPENLIMEKDVKQKVLVSLTLLFIIFRA
PSCVLNLVKQGKTNNSFNIKKITRIVLNLYSLKCCINPI Run BLAST on NCBI transcript from alignment at sc0000044:600142..601534 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004468 ID=TCONS_00004468|Name=TCONS_00004468|organism=Clytia hemisphaerica|type=transcript|length=1393bp|location=Sequence derived from alignment at sc0000044:600142..601534 (Clytia hemisphaerica)
AATCGGGTTAATGCAACATTTTAAGCTGTATAGGTTCAAAACGATTCTTG
TTATTTTCTTAATATTAAAAGAATTATTTGTTTTGCCTTGCTTAACCAAA
TTCAACACACAAGATGGTGCTCGAAAAATTATGAATAACAGAGTCAAGCT
CACTAAAACCTTCTGTTTAACATCTTTTTCCATGATGAGATTCTCAGGCG
CTCGTCTGTGTTCGATAATAAAAGCAACTATGATGGAGAATAAACTTATG
GTAAGAGGAACGAAAAACTCCACCGTAGAGCTGTAAGTCGCTGAATGTTG
CGTACTCCACACAGATGTACTATCAAGCCAGTACACTGCATCATACGTGA
AACATATAACAGTATAAAGCCACGCCAATTGTATGAATAAGGTTACAGAT
CGGTTTGTGCAGCGTGGTAAGTTATCCCATGTTCGTATCATTGACGCAAA
ACATAACATTGCTAAACTAGCTCCGTTTAGAATCCCACTCAGAAACTCAA
ACTCGCGCACCAGTTTAATGACACGTGATAAATCATCCATTTTGTCGAAA
TCGATGgataaaaatgctattttctcatACATATTTAAGGGAAATACAAC
ACACGCCTGAATCAAATCTGCTAGAGCTATattgatgaagaaaaaataaa
ctgGTGACCGTTCAGGGTCCCCGTCTGTCCCAAACAGCAAAGCAGCAATT
AGATATATGTTGGAGATGAAAGCAACACAGACAATAACAGACGCTCCAAT
GGTGTAACTGACTGCTTCATTTTCTTCGAAATCTTTGCCGATGAAGGGCT
GTATGAACACCCAATAAACAATAAAGTGTATACAAAAAGCATACATTGTC
TTCAGTATGCAATGCATTGTGGGTTTTTTGTCTTTGAGCACAAATTTGGG
TCCAGTATTTCATTGAATTTCCAGCGTTAAGAATCGATTGTCTTTGTCAT
CAACTCTTCAATAGTACAATCTCATATCAAGTCTTTGACTTGAGCGCATG
AGTGCAAATTTAGAGACAGTCTTGTTTATTACTGAATTTCAAACGTCCTA
CTccaacaaatacaataatgatatCCCCTCTCTTTCGATCCTAGATGTGT
TTTTTTTAACGCCAGGCATTTAAGAATCTATTTTTCTGCACATCGAACTA
TACCAATGAGCCGTCTTTTACTGCAACAAATTCATAGTTCCACAATATGT
AAGACAGAATTGTAGCCAAAACCTTTACAAAAATGGTTTAAACACGCCGT
TCTCTATACTTTTTGCTTTGAACTTGACAAACTTTTAACCATCCAAAGGA
TCAAACAAACTCGACTATTCTTCTTGTGTCAGAATTCACATTGGCTTCTG
GTAGTCGGTTGAAAAAGAATATTAGACATGAGAAGCGCTTGAA Coding sequence (CDS) from alignment at sc0000044:600142..601534 >TCONS_00004468 ID=TCONS_00004468|Name=TCONS_00004468|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at sc0000044:600142..601534 (Clytia hemisphaerica)
AATCGGGTTAATGCAACATTTTAAGCTGTATAGGTTCAAAACGATTCTTG
TTATTTTCTTAATATTAAAAGAATTATTTGTTTTGCCTTGCTTAACCAAA
TTCAACACACAAGATGGTGCTCGAAAAATTATGAATAACAGAGTCAAGCT
CACTAAAACCTTCTGTTTAACATCTTTTTCCATGATGAGATTCTCAGGCG
CTCGTCTGTGTTCGATAATAAAAGCAACTATGATGGAGAATAAACTTATG
GTAAGAGGAACGAAAAACTCCACCGTAGAGCTGTAAGTCGCTGAATGTTG
CGTACTCCACACAGATGTACTATCAAGCCAGTACACTGCATCATACGTGA
AACATATAACAGTATAAAGCCACGCCAATTGTATGAATAAGGTTACAGAT
CGGTTTGTGCAGCGTGGTAAGTTATCCCATGTTCGTATCATTGACGCAAA
ACATAACATTGCTAAACTAGCTCCGTTTAGAATCCCACTCAGAAACTCAA
ACTCGCGCACCAGTTTAATGACACGTGATAAATCATCCATTTTGTCGAAA
TCGATGgataaaaatgctattttctcatACATATTTAAGGGAAATACAAC
ACACGCCTGAATCAAATCTGCTAGAGCTATattgatgaagaaaaaataaa
ctgGTGACCGTTCAGGGTCCCCGTCTGTCCCAAACAGCAAAGCAGCAATT
AGATATATGTTGGAGATGAAAGCAACACAGACAATAACAGACGCTCCAAT
GGTGTAACTGACTGCTTCATTTTCTTCGAAATCTTTGCCGATGAAGGGCT
GTATGAACACCCAATAAACAATAAAGTGTATACAAAAAGCATACATTGTC
TTCAGTATGCAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004468-exon-sc0000044-1491911889:600142..601534 | TCONS_00004468-exon-sc0000044-1491911889:600142..601534 | Clytia hemisphaerica | exon |
| TCONS_00004468-exon-sc0000044-1510915933:600142..601534 | TCONS_00004468-exon-sc0000044-1510915933:600142..601534 | Clytia hemisphaerica | exon |
| TCONS_00004468-exon-sc0000044-1575043694:600142..601534 | TCONS_00004468-exon-sc0000044-1575043694:600142..601534 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:600142..601534 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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