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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001861 ID=TCONS_00001861|Name=TCONS_00001861|organism=Clytia hemisphaerica|type=transcript|length=2433bpRun BLAST on NCBI protein sequence of TCONS_00001861-protein >TCONS_00001861-protein ID=TCONS_00001861-protein|Name=TCONS_00001861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MLLRKKNSLRNFYQQFQISFQRHYCKNVALPLHNYLDEQIRNFCIIAHVDRun BLAST on NCBI transcript from alignment at sc0000012:1049367..1095674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001861 ID=TCONS_00001861|Name=TCONS_00001861|organism=Clytia hemisphaerica|type=transcript|length=46308bp|location=Sequence derived from alignment at sc0000012:1049367..1095674+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:1049367..1095674+ >TCONS_00001861 ID=TCONS_00001861|Name=TCONS_00001861|organism=Clytia hemisphaerica|type=CDS|length=40131bp|location=Sequence derived from alignment at sc0000012:1049367..1095674+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001861 vs. Swiss-Prot (Human)
Match: GUF1 (Translation factor GUF1, mitochondrial OS=Homo sapiens GN=GUF1 PE=1 SV=1) HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0 Identity = 343/614 (55.86%), Postives = 453/614 (73.78%), Query Frame = 2
Query: 140 LPLHNYLDEQIRNFCIIAHVDHGKSTLADRLLEVTGTIQKDAKNKQVLDKLQVERERGITVKAQTSSMFYKANNQKTFLYNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYGALDAGLTILPVVNKIDLASADVESCVKQLESVFDFARDEIQLVSAKEGIGIDKLLEAVHTIIPSPIVEMNQDVSLLLFDSWFDKYRGVVCLMAVKHGQLNVGDKLQSHFTKESYDVIEMGILHPDEVPVDTLYAGQAGYVVLGIRDVKKAILGDIY--HKYGSNIDEAVSERYTFKQPTPMVFAGAFPSDQSVYENMKKSIQKLTLNDASVTVHPDSSAALGQGWRLGFLGLLHMDVFKQRLAQEYDTDVIMTTPNVPYQAVL------KGNEDEKITIRSPEDFPEAIQTVALYEPMITGTLIFPEQYLGKIITLCEQKRGVQLNITYIDDTRIMMKYKLPLNEVVVDFFDKLKSISSGYASFDYEESGFEETNIEKMEILLNGKSIDALSTIVHRSKVRELGKSYCFKLKNTIPRQLFEVVIQASVRNKVIARDVVKPVRKDVTAKCYGGDLTRKRKLLDRQXXXXXXXXXXXXXXXPHEVFLSLLQ 1957
L + + E IRNF I+AHVDHGKSTLADRLLE+TGTI K NKQVLDKLQVERERGITVKAQT+S+FY K +L NLIDTPGHVDFSYEVSRSL+ACQG LLVVDA +G+QAQTVANF+ A +A L+++PV+NKIDL +AD E Q+E VFD DE +SAK G ++ +L+A+ IP P V + L+FDS FD+YRGV+ +A+ G ++ GDK+ S T+++Y+V E+G+L+P+E P LYAGQ GY++ G++DV +A +GD HK + V FK PMVFAG +P DQS Y N+K +I+KLTLND+SVTVH DSS ALG GWRLGFLGLLHM+VF QRL QEY+ VI+TTP VPY+AVL K + +++ITI +P FP+ + EP++ GT+I P++Y GKI+ LCE +R VQ N+ +ID R+M+KY PLNE+VVDF+D LKS+SSGYASFDYE++G++ + KM+ILLNG +++ L T+VH+ K +GK+ C +LK+++PRQLFE+ IQA++ +K+IAR+ VK RK+V AKCYGGD+TRK KLL RQ EGKK+++K G VEVP + F+ +L+
Sbjct: 58 LDMSRFPVENIRNFSIVAHVDHGKSTLADRLLELTGTIDKTKNNKQVLDKLQVERERGITVKAQTASLFYNCEG-KQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVENQIEKVFDIPSDECIKISAKLGTNVESVLQAIIERIPPPKVHRKNPLRALVFDSTFDQYRGVIANVALFDGVVSKGDKIVSAHTQKTYEVNEVGVLNPNEQPTHKLYAGQVGYLIAGMKDVTEAQIGDTLCLHK------QPVEPLPGFKSAKPMVFAGMYPLDQSEYNNLKSAIEKLTLNDSSVTVHRDSSLALGAGWRLGFLGLLHMEVFNQRLEQEYNASVILTTPTVPYKAVLSSSKLIKEHREKEITIINPAQFPDKSKVTEYLEPVVLGTIITPDEYTGKIMMLCEARRAVQKNMIFIDQNRVMLKYLFPLNEIVVDFYDSLKSLSSGYASFDYEDAGYQTAELVKMDILLNGNTVEELVTVVHKDKAHSIGKAICERLKDSLPRQLFEIAIQAAIGSKIIARETVKAYRKNVLAKCYGGDITRKMKLLKRQAEGKKKLRKIGNVEVPKDAFIKVLK 664 The following BLAST results are available for this feature:
BLAST of TCONS_00001861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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