TCONS_00067476-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067476-protein
Unique NameTCONS_00067476-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067476-protein ID=TCONS_00067476-protein|Name=TCONS_00067476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
MAVLLVTRANSASGGRSPEHEGMIGLPRKFPSPEKDEDLDDEEEASCEEL
VVTGIPFASHKHAVGSLNPALGNIEVRRCNFVINHEGRFKVLWDWIVLVL
VIFTAIQIPYYAAFSNNVNNIVLDVVKNNEVRPMLILSLIVDCMFVLDIF
LNFRTTYIQSSSDVLEKNPKKLAIHYLRTWFIIDLLAAIPFDWIMHQRSY
GGNTSTLVGLLKSARLLRLFRVARRLDRYSEYGLAVLFLLMCLFTLIAHW
LACIWNGISLIEEGNQNSWVHRMDDILYPKNVTRLLTNNTLNGTLSRLSI
NVIRMTQSQRYIASMYYIVSSLTSVGFGNIAATTELEQMFSIITMLLGAL
MYACIFGNMVAIVQRLYSKASTFHTQMNTIREFMKFYKIPEELRQSINNY
VRREWAVTQGIDAETVLSRFPECIQADLTYELYQNTFHSVKPFREATVSC
MRAMAMKFKTMTLQAGNFVVRQGEEINRLYIVGKGSLEVLHEGNLILYLT
RNSTFGYDFKLCHHKPKAKANIRAANLVEIHYIHVTDFLEIMECYPKFFE
QFKENYKHTYDVNDPNEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042140XLOC_042140Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067476TCONS_00067476Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR003967K_chnl_volt-dep_ERG
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
IPR005821Ion_trans_dom
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003938Potassium channel, voltage-dependent, EAG/ELK/ERGPRINTSPR01463EAGCHANLFMLYcoord: 103..110
score: 50.0
coord: 311..328
score: 62.15
coord: 246..256
score: 78.98
coord: 85..94
score: 48.75
coord: 337..348
score: 51.3
coord: 138..148
score: 49.43
coord: 149..158
score: 67.5
coord: 355..364
score: 62.81
coord: 405..412
score: 62.11
IPR003967Potassium channel, voltage-dependent, ERGPRINTSPR01470ERGCHANNELcoord: 102..114
score: 62.64
coord: 401..412
score: 41.67
coord: 384..399
score: 37.5
coord: 457..471
score: 38.1
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 442..560
e-value: 1.8E-7
score: 40.8
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 462..543
e-value: 2.8E-7
score: 30.4
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 442..542
score: 13.648
NoneNo IPR availableGENE3D1.20.120.350coord: 90..234
e-value: 2.8E-14
score: 52.5
NoneNo IPR availableGENE3D1.10.287.70coord: 235..367
e-value: 1.4E-23
score: 82.1
NoneNo IPR availableGENE3D1.10.287.630coord: 368..421
e-value: 6.2E-18
score: 64.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..41
NoneNo IPR availableCDDcd00038CAP_EDcoord: 442..552
e-value: 1.35612E-12
score: 63.499
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 307..365
coord: 86..268
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 422..565
e-value: 2.1E-21
score: 75.6
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 92..370
e-value: 4.6E-26
score: 91.4
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 369..556

Blast
[Close]
BLAST of TCONS_00067476-protein vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 2.172e-138
Identity = 208/492 (42.28%), Postives = 310/492 (63.01%), Query Frame = 0 
Query:   81 FVINHEGRFKVLWDWIVLVLVIFTAIQIPYYAAFSNNVNNIVLDVVKNN-EVRPMLILSLIVDCMFVLDIFLNFRTTYIQSSSDVLEKNPKKLAIHYLRTWFIIDLLAAIPFDWIMHQRSYGGNTSTLVGLLKSARLLRLFRVARRLDRYSEYGLAVLFLLMCLFTLIAHWLACIWNGISLIEEGNQNS---WVHRMDDILYPKNVTRLLTNNTLNGTLSRLSINVIRMTQSQRYIASMYYIVSSLTSVGFGNIAATTELEQMFSIITMLLGALMYACIFGNMVAIVQRLYSKASTFHTQMNTIREFMKFYKIPEELRQSINNYVRREWAVTQGIDAETVLSRFPECIQADLTYELYQNTFHSVKPFREATVSCMRAMAMKFKTMTLQAGNFVVRQGEEINRLYIVGKGSLEVLHEGNLILYLTRNSTFGYDFKLCHHKPKAKANIRAANLVEIHYIHVTDFLEIMECYPKFFEQFKENYKHTYDVNDPNEV 568
            + I H   FK +WDW++L+LVI+TA+  PY AAF            +     +P+ ++ LIVD MF++DI +NFRTTY+ ++ +V+  +P ++A+HY + WF+ID++AAIPFD ++    +G  +  L+GLLK+ARLLRL RVAR+LDRYSEYG AVLFLLMC F LIAHWLACIW  I  +E+ + +S   W+H + D      + +   ++ L G            +   +Y+ ++Y+  SSLTSVGFGN++  T  E++FSI  ML+G+LMYA IFGN+ AI+QRLYS  + +HTQM  +REF++F++IP  LRQ +  Y +  W+ T GID   VL  FPEC+QAD+   L ++     KPFR AT  C+RA+AMKFKT     G+ +V  G+ +  LY + +GS+E+L    ++  L +N  FG    L     K+  ++RA    ++H IH  D LE+++ YP+F + F  + + T+++ D N +
Sbjct:  398 WTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVV-SHPGRIAVHYFKGWFLIDMVAAIPFDLLI----FGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGD-----QIGKPYNSSGLGGP-----------SIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMI 868
The following BLAST results are available for this feature:
BLAST of TCONS_00067476-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH22.172e-13842.28Potassium voltage-gated channel subfamily H member... [more]
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