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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066050-protein ID=TCONS_00066050-protein|Name=TCONS_00066050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
NTTYKELSCRFYMIPKQRSFVRKMAAEHDAKVLSPANAKNANKSRIFPCR
FEGCNATFYKKSHLGRHEMVHYDIRPFICTHDGCEKAFRSNSHLKRHITS
HGKEKNFKCEYSDCNQGFYNEWSLKRHIKRTHDGPFKCRKCPKEFKKNKT
LQDHISLEHKRSVVVCTYPGCTHVFKNLAKMKFHQKLHSSKGYQCSVKGC
GETFAHFSECRKHSAICKTKEKVCDVCGKTFTNRSNLKAHLKTHDEEREV
FKCQYAECGRTYTKKYNLQAHIKSFHQNSQHFECPKSYCSKTFSYKHSLR
RHLEYHDRIDKHHASPSNVEPKRKKRPKRMVTKDIAAITGYIPELMYKMT
PAEMNDYVNNGVYDPECFEDTDIIPKECETTQAEMSAMSSGEFSCLKTTE
TEENDEEVETIANEIKSRNNKEVNVMHSSGDESTEIAIDASEETVTAQSA
DEMIVFEESTLEEAKQLLESQRLHSSSSLSSTRSNSPSDKRTFTRKEVQL
LNEKIHQIARLRNANKQSIEKTFDRPCSMQQTVINKTDSDSSDNERVLIQ
QLA Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 501..521 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 136..159
e-value: 0.0013
score: 18.9
coord: 107..132
e-value: 0.0034
score: 17.7
coord: 223..244
e-value: 2.0E-6
score: 27.8
coord: 77..101
e-value: 0.0013
score: 19.0
coord: 282..306
e-value: 0.0026
score: 18.0
coord: 251..276
e-value: 1.1E-4
score: 22.4 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 66..84
e-value: 5.6E-9
score: 35.4
coord: 98..119
e-value: 1.1E-10
score: 40.8
coord: 241..264
e-value: 6.4E-10
score: 38.4 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 228..240
e-value: 3.8E-8
score: 32.8 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 265..293
e-value: 1.5E-7
score: 31.2
coord: 120..147
e-value: 3.3E-10
score: 39.7
coord: 178..203
e-value: 0.008
score: 16.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 47..65
e-value: 9.2E-4
score: 18.7
coord: 85..97
e-value: 3.4E-6
score: 26.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 294..476
e-value: 8.6E-4
score: 18.9 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 148..177
e-value: 1.9E-5
score: 24.5 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 204..227
e-value: 0.0034
score: 16.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 308..330 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 468..493 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 193..215
e-value: 26.0
score: 9.6
coord: 77..101
e-value: 9.3E-4
score: 28.5
coord: 282..306
e-value: 0.0066
score: 25.7
coord: 222..244
e-value: 5.5E-4
score: 29.2
coord: 251..276
e-value: 0.033
score: 23.3
coord: 136..159
e-value: 0.032
score: 23.4
coord: 164..188
e-value: 0.25
score: 20.4
coord: 47..71
e-value: 0.066
score: 22.3
coord: 107..132
e-value: 2.4E-4
score: 30.5 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 79..101 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 49..71 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 166..188 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 253..276 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 284..306 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 138..159 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 224..244 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 109..132 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 282..306
score: 11.011 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 77..106
score: 12.237 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 47..76
score: 11.635 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 136..159
score: 9.64 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 222..249
score: 13.755 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 251..281
score: 11.843 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 107..137
score: 10.949 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 193..223
score: 8.808 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 87..145 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 191..244 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 48..101 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 230..285 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 275..307 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 135..188 |
Blast
BLAST of TCONS_00066050-protein vs. Swiss-Prot (Human)
Match: TF3A (Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3) HSP 1 Score: 182.956 bits (463), Expect = 1.282e-52 Identity = 124/331 (37.46%), Postives = 168/331 (50.76%), Query Frame = 0
Query: 45 RIFPCRFEGCNATFYKKSHLGRHEMVHYDIRPFICTHDGCEKAFRSNSHLKRHITSHGKEKNFKCEYSDCNQGFYNEWSLKRHIKRTHDGP---FKC--RKCPKEFKKNKTLQDHISLEHKRSVVVCTYPGCTHVFKNLAKMKFHQKLHSSKGYQCSVKGCGETFAHFSECRKHSAICKTKEKVCDVCGKTFTNRSNLKAHLKTHDEEREVFKCQYAECGRTYTKKYNLQAHIKSFHQNSQHFECPKSYCSKTFSYKHSLRRHLEYHDRIDKHHASPSNVEPKRKKRPKRMVTKDIAAITGYIPELMYKMTPAEMNDYVNNGVYDPECFED 370
R F C F C+A + K L H H RPF+C ++GC KAF + HL RHI +H EK F C + C+Q F + +LK+H +R H+ + C C K FKK++ L+ H + CT GC F + +K+K H K H +GY C KGC ++E KH +E +C+VC KTF + LK H+KTH ER+V +C CGRTYT +NLQ+HI SFH+ S+ F C + C KTF+ K SL RH HD P + K K + R + ++GYIP K + NG P C ED
Sbjct: 38 RRFICSFPDCSANYSKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHILTHTGEKPFVCAANGCDQKFNTKSNLKKHFERKHENQQKQYICSFEDCKKTFKKHQQLKIHQCQHTNEPLFKCTQEGCGKHFASPSKLKRHAKAH--EGYVCQ-KGCSFVAKTWTELLKHVRETHKEEILCEVCRKTFKRKDYLKQHMKTHAPERDVCRCPREGCGRTYTTVFNLQSHILSFHEESRPFVCEHAGCGKTFAMKQSLTRHAVVHD--------PDKKKMKLKVKKSREKRSLASHLSGYIPP---KRKQGQGLSLCQNG-ESPNCVED 353
The following BLAST results are available for this feature:
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