TCONS_00065060-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065060-protein
Unique Name	TCONS_00065060-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	462

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065060-protein ID=TCONS_00065060-protein|Name=TCONS_00065060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MTSSHFINHTLHYTHHFNGTNHTGHHTNGYHNDSLHHNNSLHHMQQNMPP
PIIPLWFHKLIFALYILLSCVGGIGNFLVCLVLIRRKQRVRSIHLLTLNL
AVSDLIVCIIYVPTQMYQIQVNYLWDLGVIACGVSFGVNSCTVNASIGTL
IVITYDRYVAVTQPMVAHQRNTKRTKILIFVVWLISGLITIPLMIVADIH
QGYCTEHWPSREMGNIYWVIIFVVQLPLPMLYIVAAYCIIVYAVKSSHSQ
FELVKLHNDLQKQEERKLRNGACCHNDTNNNKDGNQAVDMDESVFSSRFN
NKTRLPNRNNGRRLSVTRRKRRRSSNGSRKKQQNKLLKMSIILVIAYTVC
VTPQHAVFFAATYGTLALKPYAAFFFIVSNFLMSLNSAINPLIYGTLNDE
MKKSLVRLFKCSSADDNKLTRNVSSALTTLRETIRLRFKPSSTFGKSRLL
QRTRNMTETSAC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040789	XLOC_040789	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065060	TCONS_00065060	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 336..360 score: 20.77 coord: 60..84 score: 29.64 coord: 218..241 score: 21.26 coord: 376..402 score: 29.11 coord: 139..161 score: 32.3 coord: 93..114 score: 29.9 coord: 174..195 score: 24.24
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 75..394 e-value: 9.3E-45 score: 152.8
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 145..161
None	No IPR available	GENE3D	1.20.1070.10		coord: 21..414 e-value: 8.8E-71 score: 237.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..332
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 28..249 coord: 322..413
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 75..394 score: 37.022

Blast

[Close]

BLAST of TCONS_00065060-protein vs. Swiss-Prot (Human)
Match: SSR4 (Somatostatin receptor type 4 OS=Homo sapiens GN=SSTR4 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.703e-16
Identity = 57/190 (30.00%), Postives = 93/190 (48.95%), Query Frame = 0

Query:   64 LYILLSCVGGIGNFLVCLVLIRRKQRVRSIHLLTLNLAVSDLIVCIIYVPTQMYQIQVNYLWDLGVIACGVSFGVNSCTVNASIGTLIVITYDRYVAVTQPM-VAHQRNTKRTKILIFVVWLISGLITIPLMIVADIHQG------YCTEHWPSREMGNIYWVIIFVVQLPLPMLYIVAAYCIIVYAVKS 246
            +Y L+  VG +GN LV  V++R  +   + ++  LNLAV+D +  ++ VP       + + W  G + C     V+   +  S+  L V++ DRYVAV  P+  A  R     K++   VWL S L+T+P+ I AD           C   WP      ++ V  F++   LP+L I   Y +IV  +++
Sbjct:   53 IYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELF-MLSVPFVASSAALRH-WPFGSVLCRAVLSVDGLNMFTSVFCLTVLSVDRYVAVVHPLRAATYRRPSVAKLINLGVWLASLLVTLPIAIFADTRPARGGQAVACNLQWPHPAWSAVFVVYTFLLGFLLPVLAIGLCYLLIVGKMRA 240

The following BLAST results are available for this feature:

BLAST of TCONS_00065060-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065060-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSR4	4.703e-16	30.00	Somatostatin receptor type 4 OS=Homo sapiens GN=SS...	[more]

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TCONS_00065060-protein (polypeptide) - C. hemisphaerica