TCONS_00063796-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063796-protein
Unique NameTCONS_00063796-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063796-protein ID=TCONS_00063796-protein|Name=TCONS_00063796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MPKSFLLKRTANLNQDELVQPQGDALALVKNEQRENESESDDDEENQWRI
ETDSKVDVCSLGEDGEDDRSSFSSECPSNTSEKENHRMATEVESLKNGVF
DSVPFPRSFMEFLNDERITKSLESIGDYCKEKHREVTERISQELSEKPFL
ASSVNNKLHPNLASQQHFYSNNVLPSIQSILQFRNHQQHQQQNHQKQQPP
YPTANFANAAFGHLLKGFEAIQPAPHFQPNHLLNHQIANLNQSFEDKQPL
DRNYPCKICSKTFKRSSTLSTHMMIHANIRPFACTFCGKRFHQKSDMRKH
TYTHTGEKPHQCNFCGKSFSQSSNLITHCRKHKGFKPFRCSICLEDFQQK
IDLRKHMYTHQNKDSIRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039994XLOC_039994Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063796TCONS_00063796Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 338..360
e-value: 0.0037
score: 26.5
coord: 254..276
e-value: 4.5E-4
score: 29.5
coord: 310..332
e-value: 0.0027
score: 27.0
coord: 282..304
e-value: 0.0038
score: 26.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 284..304
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 340..360
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 312..332
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 256..276
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 338..365
score: 10.845
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 254..281
score: 13.9
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 310..337
score: 14.669
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 282..309
score: 16.103
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 335..364
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 252..304
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 291..343
NoneNo IPR availableGENE3D3.30.160.60coord: 289..302
e-value: 1.1E-11
score: 44.1
NoneNo IPR availableGENE3D3.30.160.60coord: 316..328
e-value: 5.9E-11
score: 41.8
NoneNo IPR availableGENE3D2.20.25.10coord: 303..315
e-value: 4.2E-5
score: 23.0
NoneNo IPR availableGENE3D3.30.160.60coord: 329..366
e-value: 1.8E-13
score: 49.7
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 310..332
e-value: 9.8E-4
score: 19.4
coord: 254..276
e-value: 4.2E-6
score: 26.8
coord: 338..360
e-value: 0.013
score: 15.8
NoneNo IPR availableGENE3D2.30.30.380coord: 268..288
e-value: 4.9E-10
score: 38.9
NoneNo IPR availableGENE3D3.30.160.60coord: 180..267
e-value: 5.1E-10
score: 38.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..85

Blast
[Close]
BLAST of TCONS_00063796-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.272e-52
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 0 
Query:  251 DRNYPCKICSKTFKRSSTLSTHMMIHANIRPFACTFCGKRFHQKSDMRKHTYTHTGEKPHQCNFCGKSFSQSSNLITHCRKHKGFKPFRCSICLEDFQQKIDLRKHMYTHQN 362
            +R++ C++C K FKRSSTLSTH++IH++ RP+ C FCGKRFHQKSDM+KHTY HTGEKPH+C  CGK+FSQSSNLITH RKH GFKPF C +C + FQ+K+DLR+H  +  N
Sbjct:  217 ERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHN 328
The following BLAST results are available for this feature:
BLAST of TCONS_00063796-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI1B7.272e-5266.07Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1... [more]
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