TCONS_00063759-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063759-protein
Unique NameTCONS_00063759-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063759-protein ID=TCONS_00063759-protein|Name=TCONS_00063759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp
MLAYQISRDPIVKQTVRQIFYDKAKIQISPTKKGKKEIDDFHAAAPFKYL
RNKPVRDLSGEQFFKMCHAEQEKLVKIKIAIDADLPNGAQSYLDEIKQLF
YRDEYSNLVQEWNKQRCQVLDIALNKMLYPQLSKELKSKLLNESVDFTLM
TCGLKLRNWISVRPYQADSSYKEGGHENVESEHTCCPVLSCSFTVDKESA
SYFAMIDADGQMVDFLRLKHLLWRRNSRKENERKAKEKDMEILKNFILRH
QPRAVAISAETRESTSVMEDISRAITELEQEQSMSTIYVELVDAEVARLY
QDSPRGRAEFPDYPPLLRHAISIARRLQDPLEEFANLCETEDELLCLRFH
QLQEYLPRDRLAKRMQIEFINVVNEVGVDINRALEFTHSTILTHFLCGLG
PRKANHLMKTIRQNGGRLDNRSQLVTVCEMGLQVFLNCAGFIRIEPSEAN
DDRYEVLDGTRIHPETYDWPRKMAVDSADDNDVPENPTMAVEEVMTDPGR
LKDLDLDAFAEELARQGYGNKQITLYDIRDELSYRFKDHRPPFRGLGFQE
KFELLTGETQQTLYYGKLITCLATGFAFKKATRDELDSANPTRNDETNLW
KCPFCLKDTFLDLSEVWTHFDNGSCPGQAVGVRTRLDNGISGFISNKNIS
DKGVRRPEERVRVGMTLHARVIKINYERFQVDLTCKSSELADAQGKFASP
KDLYYDQENADKEKKQEENKKQIQAKRTTYLKRVIAHPSFKNVTFKDAEK
LLDTMTQGDCIVRPSSKGCDHFDRDVED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039976XLOC_039976Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063759TCONS_00063759Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR023323Tex-like_dom
IPR003029S1_domain
IPR000980SH2
IPR027999Spt6_dom
IPR006641YqgF/RNaseH-like_dom
IPR032706Spt6_HHH
IPR028231Spt6_YqgF
IPR010994RuvA_2-like
IPR012340NA-bd_OB-fold
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 705..727
NoneNo IPR availableGENE3D2.40.50.140coord: 543..691
e-value: 5.4E-15
score: 54.8
NoneNo IPR availablePFAMPF14633SH2_2coord: 704..771
e-value: 1.4E-21
score: 76.8
NoneNo IPR availableGENE3D1.10.150.310coord: 387..540
e-value: 1.9E-27
score: 95.9
NoneNo IPR availableCDDcd00164S1_likecoord: 631..684
e-value: 1.65649E-5
score: 42.3675
NoneNo IPR availableSUPERFAMILY158832Tex N-terminal region-likecoord: 1..160
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 625..686
e-value: 0.001
score: 28.3
IPR023323Tex-like domainGENE3D1.10.3500.10coord: 1..171
e-value: 3.6E-34
score: 118.0
IPR003029S1 domainPFAMPF00575S1coord: 630..686
e-value: 5.2E-9
score: 36.2
IPR003029S1 domainPROSITEPS50126S1coord: 631..686
score: 12.867
IPR000980SH2 domainGENE3D3.30.505.10coord: 728..773
e-value: 0.0021
score: 17.5
IPR027999Death-like domain of Spt6PFAMPF14878DLDcoord: 455..560
e-value: 6.7E-33
score: 113.4
IPR006641YqgF/RNase H-like domainGENE3D3.30.420.140coord: 183..344
e-value: 2.9E-42
score: 143.6
IPR032706Transcription elongation factor Spt6, helix-hairpin-helix motifPFAMPF14635HHH_7coord: 343..444
e-value: 2.7E-34
score: 117.5
IPR028231Transcription elongation factor Spt6, YqgF domainPFAMPF14639YqgFcoord: 187..338
e-value: 1.1E-40
score: 138.7
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 455..541
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 353..445
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 631..688
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 197..340

Blast
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BLAST of TCONS_00063759-protein vs. Swiss-Prot (Human)
Match: SPT6H (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2)

HSP 1 Score: 840.106 bits (2169), Expect = 0.000e+0
Identity = 401/780 (51.41%), Postives = 562/780 (72.05%), Query Frame = 0 
Query:    1 MLAYQISRDPIVKQTVRQIFYDKAKIQISPTKKGKKEIDDFHAAAPFKYLRNKPVRDLSGEQFFKMCHAEQEKLVKIKIAIDADLPNGA---QSYLDEIKQLFYRDEYSNLVQEWNKQRCQVLDIALNKMLYPQLSKELKSKLLNESVDFTLMTCGLKLRNWISVRPYQADSSYKEGGHENVESEHTCCPVLSCSFTVDKESASYFAMIDADGQMVDFLRLKHLLWRRNSRKENERKAKEKDMEILKNFILRHQPRAVAISAETRESTSVMEDISRAITELEQEQSMSTIYVELVDAEVARLYQDSPRGRAEFPDYPPLLRHAISIARRLQDPLEEFANLCETEDELLCLRFHQLQEYLPRDRLAKRMQIEFINVVNEVGVDINRALEFTHSTILTHFLCGLGPRKANHLMKTIRQNGGRLDNRSQLVTVCEMGLQVFLNCAGFIRIEPSEAND--DRY-EVLDGTRIHPETYDWPRKMAVDSADDNDVPE--NPTMAVEEVMTDPGRLKDLDLDAFAEELARQGYGNKQITLYDIRDELSYRFKDHRPPFRGLGFQEKFELLTGETQQTLYYGKLITCLATGFAFKKATRDELDSANPTRNDETNLWKCPFCLKDTFLDLSEVWTHFDNGSCPGQAVGVRTRLDNGISGFISNKNISDKGVRRPEERVRVGMTLHARVIKINYERFQVDLTCKSSELADAQGKFASPKDLYYDQENADKEKKQEENKKQIQAKRTTYLKRVIAHPSFKNVTFKDAEKLLDTMTQGDCIVRPSSKGCDHF 772
            M+A QI+R+P+V+Q +RQ F ++AK+ I+PTKKG+K++D+ H A  FKYL+NKPV++L  +QF K+C AE E L+   I+ID     G    Q+Y +EIKQ +YRDE+S+ VQEWN+QR   ++ AL + LY Q++KELK+KLL E+ ++ +  C  KL NW+ V PY+ D   +E      E++     VL  +F+  ++   + A+++ +G++ DFLRL H   RR + +E ER+ K +D+E LK F+L  +P  V ++ E R++  ++ED+ R + EL+Q Q +S+I VELVD E+A LY +S +  AEF DYPP+LR A+S+ARR+QDPL EFA +C +++++LCL+FH LQE++ ++ L   +  EFIN VNEVGVD+NRA+   +S  L  ++CGLGPRK  HL+K ++QN  RL++R+QLVT+C MG +VF+NCAGF++I+ +   D  D Y EVLDG+R+HPETY+W RKMAVD+ + ++  E  NP  A+EE++ +P RLKDLDLDAFAEEL RQGYG+K ITLYDIR ELS R+KD R  +R    +E F +LT ET +T Y GKLI C  TG A ++   +  D A   RNDET LW+CPFC +D F +LSEVW HFD+GSCPGQA+GV+TRLDNG++GFI  K +SDK V+RPEERV+VGMT+H R++KI+ E+F  DLTC++S+L D   ++  PKD YYD +    + KQEE+ K+ Q +RTTY+KRVIAHPSF N+ FK AEK+++TM QGD I+RPSSKG +H 
Sbjct:  591 MVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQA--IRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ-QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHL 1367
The following BLAST results are available for this feature:
BLAST of TCONS_00063759-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT6H0.000e+051.41Transcription elongation factor SPT6 OS=Homo sapie... [more]
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