TCONS_00063657-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063657-protein
Unique Name	TCONS_00063657-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	383

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063657-protein ID=TCONS_00063657-protein|Name=TCONS_00063657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MAYFLSTEFEALKHDVNKLFSKFHEKQSVRFDDFCEEWKKLNFSALFGAT
YRNTPGSKMRIAERLFRIASEFLSEDSTFLYRVAAIYTFYAVYFKQVTPV
KTKIRMTPAMWTDLMQFTEVLKKHSHYDVVYIIHVLRKSKAFCFTAFPKE
LFFGKIEFMLGVEGISGFKHSQERSEYLTEILDDERIVPKLQAIQNDYAA
IKEKLIAESQENEREDLSKVLFYINQDFPEDVSTMINSYKRKYDDSMTTY
QSNDEATQRPVLTQLRKIKETTTAPTTTIITDSDSQAEDETRASKIFKLK
EKLWSSNIQVDKSKGYEIKKEKKKLSALEESIAEKEREKEDKRHYYKKSA
MLQVKSKVPGSKSKSKHPYIRFELPTQADVYEH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039899	XLOC_039899	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063657	TCONS_00063657	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019188	SNAPc_SNAP43

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..211
None	No IPR available	COILS	Coil	Coil	coord: 318..345
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PFAM	PF09808	SNAPc_SNAP43	coord: 12..202 e-value: 2.1E-36 score: 125.6

Blast

[Close]

BLAST of TCONS_00063657-protein vs. Swiss-Prot (Human)
Match: SNPC1 (snRNA-activating protein complex subunit 1 OS=Homo sapiens GN=SNAPC1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.587e-22
Identity = 79/306 (25.82%), Postives = 134/306 (43.79%), Query Frame = 0

Query:   11 ALKHDVNKLFSKFHEKQSVRFDDFCEEWKKLNFSALFGATYRNTPGSKMRIAERLFRIASEFLSEDSTFLYRVAAIYTFYAVYFKQVTPVKTKIRMTPAMWTDLMQFTEVLKKHSHYDVVYIIHVLRKSKAFCFTAFPKELFFGKIEFMLGVEGISGFKHSQERSEYLTEILDDERIVPKLQAIQNDYAAIKEKLIAESQENEREDLSKVLFYINQDFPEDVSTMINSYKRKYDDSMTTYQSNDEATQRPVLTQLRKIKETTTAPTTTIITDSDSQAEDETRASKIFKLKEKLWSSNIQVDKSKGY 316
             L+ D   L S+F E  SVRF+DF E W+ + F  +F    RN    K    +    +A  +     TF  RV A+Y  Y +Y  Q+   K KIR+    W ++++F + L    H+D  YI   LR  +AF FTA PK L +   + +   E    FK   +R   L  I  D  ++ ++  + + Y  +K  +  +  + +     K L  I  DF +++  ++  +++ + D            + P L       ++ T      +  +  + E   RA  + K+K K +S  IQ  KS+ +
Sbjct:    6 GLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCGRMRNL--EKNMFTKEALALAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVLKFQQDLVNAQHFDAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEEFKDPSDRVMKL--ITSD--VLEEMLNVHDHYQNMKHVISVDKSKPD-----KALSLIKDDFFDNIKNIVLEHQQWHKDR-----------KNPSL-------KSKTNDGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQASKSRRH 282

The following BLAST results are available for this feature:

BLAST of TCONS_00063657-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063657-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNPC1	1.587e-22	25.82	snRNA-activating protein complex subunit 1 OS=Homo...	[more]

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TCONS_00063657-protein (polypeptide) - C. hemisphaerica