TCONS_00062622-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062622-protein
Unique NameTCONS_00062622-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1792

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062622-protein ID=TCONS_00062622-protein|Name=TCONS_00062622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1792bp
MLSLRNLHQPYDKKTIKKKELTVNQIAQTYTLDGLKCSGTSNGFLDHMEF
QEKMFLKRFGNGHNTLKSCLSEAANLMSYSNFNKRYHSSLLPSLVITKPP
PKPKTPATRKIKTENDLSFTGISMPALNKLSSDFAPSVLKPKKELRCFFC
NKAWRSPKLLESHQEMCQRRAMKFKKKAVLKKVRSIIVKSRLVKPKKPKP
PPKILPFQCPKCSDRFVSNQTLEMHMKFDHRPRPTCSNCQKVFDCKRKLL
EHEHSEEDKLFIKQSLGVVDILCPNKVLTCDKCENYFTTADLLREHKHMV
KKRNPLPLLITNKKEDVRTEKITFKVCVKNVPEVVINRVKLPPGDNNCPH
CGKVFQNDARLHQHGMFCHAIHGRRKKPVSKSPKTDTVCSQCNVDFKTSK
KLIKHTLFFHRVKTKSSSSKDISCKTCKKTFLSKNHYQKHFKQHGSPNIC
PLCTRFKHFETAEFLRWHVSLVHRKKYCFICRKTYLPQSTHKCKLPRLPK
NRTTKNIIKEEPALQEDPTLELVTIPDDVKPVLTPYRDGSFPCTECEEKF
TREIYLLEHLVSHTDLTPYKCEYCQKTFTDLTIFTSHLRTAHRPLDESSP
YSLCSLKSHLKKELNIVNCQLCAQLFMGNEALEKHSKEQHPDLITNDQIL
FSFDRKGRKAISNYLVHVDCEIKLNGLKTEEENIEIRSSGPPLEKLLTII
ETVDLVEPVGHSTSPQKELISENTDTEQEIISAEEIAQSFLLPLSIESEP
VEEIEIPQDKPKGVSTRSTEVVTDDKTGILDKLKHLKKTRSKSLNCLSLK
NEVVNIVDSDDDDADQEGETKQDQTTSETLPKASPSETQDQKTSETVPKA
SPSETQDQKTSETVPKASPSETQDQKTSETLPKASPSETQDQKTSETVPK
ASLSETQDQKTSETVPKASLSETQDQKTSETVPKASPSETQDQETSETVP
KASLSETQDQKTSETVPKASPSETQDQETSETVPKASPSEKQDLTNDQPQ
QCQSQKDQSTPDSISKTMSSSSETGDLYVNQPPQLQSEKNRSTSDLTAEA
NNLPFDIRESSHDEPLKRQRGRPPSQSDSTSPKKRAKRNRNQDKDCVADN
VKISDEAKVVEYGLRRRKRLPEVITLSSDTEDERPITCVSMVTKSPGIND
TSPKKKRGRPRKDSMNNSDRVLSPLVNDVVSPSSSDQKKLGSTRKSDATG
GEETTRESDNNVVVIGKKKRGRPRKSETVGNTGDVPTKKKKKGRKRFFNL
YPDEDEQLPSMVDMNRVPDLKAPNYVPDHSDHVNGFLHHDRLGTNGFLTD
TIDCNSDVKKRRSLPMPILPAPTPLVKPTCLQRFDHQREPIQTKRNHVVD
RNSGFAPIRKSDAFQLASYAQHDRLEKRVAALRQKKSPTSLPSTFQIQNP
PTAQPTIQMIQPPIYPKCDKCNINFLDNEMLKRHMECHSLINSDGTNTPK
NPHSNAQPPSHSNAQPPSHSNAQPSSHSNAQPSSHVSPQTNSRPSKSPCF
LQESGIVLSANKISQPKTKPQFIDLSKELFESRVNKNRKSNSNSPPVVTN
GSNSDKTNRRNSDSNVSTKSNDSPSMNKRKQTKPKPLKISQTTSPTESEY
EHTNYEKDVEIPVVEIPSAANTKIKQDSSVQQSSEENPTKGSTEQNKSYN
INIPSNDKQSNNFSEYPRTKPEINNNINRRRSTLKESNFPASKGHKPIPP
SFCQPLPPPPXRRRSTLKESNFPASKGHKPIPPSFCQPLPPPPFPPQIPF
HLYPPAPGQFVEGVPFPQTMFPPLPMAVYYPPKHDEMNTFDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039243XLOC_039243Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062622TCONS_00062622Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 1067..1077
score: 57.58
coord: 1215..1225
score: 56.44
coord: 1152..1163
score: 56.94
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 1154..1166
e-value: 3.2
score: 12.4
coord: 1217..1229
e-value: 0.85
score: 15.7
coord: 1067..1079
e-value: 0.95
score: 15.4
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 448..473
e-value: 14.0
score: 11.9
coord: 541..563
e-value: 0.02
score: 24.0
coord: 1416..1438
e-value: 2.7
score: 17.0
coord: 207..230
e-value: 0.0057
score: 25.9
coord: 387..410
e-value: 5.5
score: 15.6
coord: 569..592
e-value: 0.0053
score: 26.0
coord: 422..444
e-value: 0.21
score: 20.7
coord: 278..298
e-value: 93.0
score: 4.7
coord: 346..369
e-value: 21.0
score: 10.4
coord: 617..640
e-value: 7.0
score: 14.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 619..640
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 571..592
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 348..369
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 209..230
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 389..410
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 1418..1438
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 424..444
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 543..563
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 207..234
score: 10.367
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 346..377
score: 9.827
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 422..449
score: 9.411
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 569..597
score: 10.596
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 541..568
score: 11.718
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 206..252
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 541..590
NoneNo IPR availableGENE3D2.20.28.30coord: 397..434
e-value: 0.0028
score: 17.3
NoneNo IPR availableGENE3D3.30.160.60coord: 219..247
e-value: 9.3E-8
score: 31.9
coord: 435..484
e-value: 0.05
score: 13.5
NoneNo IPR availableGENE3D3.30.160.60coord: 581..638
e-value: 9.7E-4
score: 18.7
NoneNo IPR availableGENE3D3.30.160.60coord: 143..218
e-value: 7.4E-6
score: 25.7
coord: 359..396
e-value: 8.0E-4
score: 19.2
coord: 248..287
e-value: 1.2E-5
score: 25.1
NoneNo IPR availableGENE3D2.20.28.30coord: 288..358
e-value: 9.2E-4
score: 19.0
NoneNo IPR availableGENE3D3.30.160.60coord: 488..552
e-value: 0.066
score: 12.8
NoneNo IPR availableGENE3D3.30.160.60coord: 1238..1425
e-value: 0.018
score: 14.7
coord: 553..580
e-value: 7.3E-12
score: 44.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1426..1456
e-value: 0.17
score: 11.4

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062622-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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