TCONS_00061962-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061962-protein
Unique Name	TCONS_00061962-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	398

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061962-protein ID=TCONS_00061962-protein|Name=TCONS_00061962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MRSQSHKSLHREKRKSYISFCLLGVFVAVFISAYRDPNFWSDSNLKKIGN
NFVNKVLKKFSKTQEIRPRRPKKKDKITDKEERLIMTYKSIKEFATANKK
REGGGFMVRRPIGDKIDNVDPFLMLDHLGPTVYGPGEAIGAPDHPHRGFE
TVTYVIDGGIHHKDSAGNEGNLGPGWVQWMTAGSGVVHSEMPTDELLRTG
GRMEGFQLWVNLPKKFKMSPPRYQDTPPEKIPIVTSPDGGTSVKVIAGEC
LGTKAAIETKIPIMFLDIKINRGSSFDVSIPENTNSFVYIWRGNGFIGSD
KKPVTMGQVASLSKEGDVFQLNASEDSALHAFVIAGQPIEKPIARYGPFV
MNTYEEIQQAFDDYRNGRLGKIDGAEERYAKTEQAKQQNKQSGNWNKH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038844	XLOC_038844	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061962	TCONS_00061962	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008778	Pirin_C_dom
IPR014710	RmlC-like_jellyroll
IPR012093	Pirin
IPR003829	Pirin_N_dom
IPR011051	RmlC_Cupin

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 372..392
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..398
IPR008778	Pirin, C-terminal domain	PFAM	PF05726	Pirin_C	coord: 265..369 e-value: 1.9E-27 score: 95.5
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 85..343 e-value: 5.3E-79 score: 264.7
IPR012093	Pirin	PIRSF	PIRSF006232	Pirin	coord: 87..378 e-value: 7.6E-93 score: 308.8
IPR003829	Pirin, N-terminal domain	PFAM	PF02678	Pirin	coord: 110..210 e-value: 3.4E-34 score: 117.0
IPR011051	RmlC-like cupin domain	SUPERFAMILY	51182	RmlC-like cupins	coord: 94..378

Blast

[Close]

BLAST of TCONS_00061962-protein vs. Swiss-Prot (Human)
Match: PIR (Pirin OS=Homo sapiens GN=PIR PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.250e-64
Identity = 116/288 (40.28%), Postives = 170/288 (59.03%), Query Frame = 0

Query:   87 TYKSIKEFATANKKREGGGFMVRRPIG-DKIDNVDPFLMLDHLGPTVYGPGEAIGAPDHPHRGFETVTYVIDGG-IHHKDSAGNEGNLGPGWVQWMTAGSGVVHSEMPTDELLRTGGRMEGFQLWVNLPKKFKMSPPRYQDTPPEKIPIVTSPDGGTSVKVIAGECLGTKAAIETKIPIMFLDIKINRGSSFDVSIPENTNSFVYIWRGNGFIGSD--KKPVTMGQVASLSKEGDVFQLNASEDSALHAFVIAGQPIEKPIARYGPFVMNTYEEIQQAFDDYRNGRLG 370
            + K +     + ++ EG G  VRR IG  ++ N+DPFL+ D      +  G   G PDHPHRGFETV+Y+++GG + H+D  G+ G + PG +QWMTAG G++H+EMP  E         G QLWVNL    KM  P+YQ+   E+IP  +    G +V VI+GE LG K+ + T+ P ++LD K++ G+     IP+   SF+Y   G+ +IG D  ++ +     A L  EGD  Q+   +    H  +IAG+P+ +P+ ++GPFVMNT EEI QA  D+RN + G
Sbjct:    3 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDE-----FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSE-----EPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSK--DGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLG-EGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNG 277

The following BLAST results are available for this feature:

BLAST of TCONS_00061962-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIR	1.250e-64	40.28	Pirin OS=Homo sapiens GN=PIR PE=1 SV=1	[more]

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TCONS_00061962-protein (polypeptide) - C. hemisphaerica