TCONS_00061650-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061650-protein
Unique NameTCONS_00061650-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061650-protein ID=TCONS_00061650-protein|Name=TCONS_00061650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MVYHNGHRLFLQAFVSKRLIKEKEAKDLYMKVCNICEADGNPDEFLDFIS
LINKQLESLFMEIRRGCAEDTGHVYFSLVNKAEDEHSKLATEYQAHEIEL
IKLALNLIIESQNGSVSSLDLVNLGMDLTKRIPAQASEELIMKLVEDGWL
TEKDGKVFFGPRTTIELGQYLRNKYKEQIGECPLCHDFVVMGDICEECDV
KLHKYCAALSFQKLPANKRKCPKCKTEWTRNIIKLSRPSNNNNSINLEET
VVNHRNVPTSSQQPSTSSGKKRARR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038661XLOC_038661Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061650TCONS_00061650Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014857Znf_RING-like
IPR013083Znf_RING/FYVE/PHD
IPR011513Nse1
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0030915 Smc5-Smc6 complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..275
IPR014857Zinc finger, RING-likePFAMPF08746zf-RING-likecoord: 182..224
e-value: 6.4E-7
score: 29.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..260
e-value: 3.5E-5
score: 22.8
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 7..167
e-value: 4.9E-24
score: 85.2

Blast
[Close]
BLAST of TCONS_00061650-protein vs. Swiss-Prot (Human)
Match: NSE1 (Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5)

HSP 1 Score: 157.147 bits (396), Expect = 8.907e-47
Identity = 83/244 (34.02%), Postives = 137/244 (56.15%), Query Frame = 0 
Query:    2 VYHNGHRLFLQAFVSKRLIKEKEAKDLYMKVCNICEADGNPDEFLDFISLINKQLESLFMEIRRGCAEDTGHVYFSLVNKAEDEHSKLATEYQAHEIELIKLALNLIIESQNGSVSSLDLVNLGMDLT-KRIPAQASEELIMKLVEDGWLTEKDGKVFFGPRTTIELGQYLRNKYKEQIGECPLCHDFVVMGDICEECDVKLHKYCAALSFQKLPANKRKCPKCKTEWTRNIIKLSRPSNNNNS 244
            V  + HR FLQ  ++  +++E + K L      + + +   D+  DFI+ IN  LESL++EI+RG  ED G   ++LVN A    SK+AT++  +E++L + AL LII+S+ G  SS +++NL   L  K++  + +E+++ K V++ WL EK+G+     R  +E+ QY+R  Y + +  C +CH  ++ G  CE C +++H  C A  FQ     + +CP C   W   I K+  P     S
Sbjct:   10 VMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEIPKVFDPEKERES 251
The following BLAST results are available for this feature:
BLAST of TCONS_00061650-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSE18.907e-4734.02Non-structural maintenance of chromosomes element ... [more]
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