TCONS_00061290-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061290-protein
Unique NameTCONS_00061290-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061290-protein ID=TCONS_00061290-protein|Name=TCONS_00061290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MAAGRFACTQVLSHIVRGSNSLLSKSRSALPQQKRLISLASQAYQRYFTK
DHEWIDVEGNVGTVGITDHAQAALGELVYVELPEVEDSFDQDDSVGAVES
VKAASDVMTPVSGTIVAVNEDLTANPSLINKNAESDAWMFKIELSDADEL
SEMLDAAGYKAFVDAESG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038455XLOC_038455Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061290TCONS_00061290Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017453GCV_H_sub
IPR033753GCV_H/Fam206
IPR002930GCV_H
IPR000089Biotin_lipoyl
IPR011053Single_hybrid_motif
Vocabulary: Biological Process
TermDefinition
GO:0019464glycine decarboxylation via glycine cleavage system
Vocabulary: Cellular Component
TermDefinition
GO:0005960glycine cleavage complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
cellular_component GO:0005960 glycine cleavage complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMTIGR00527TIGR00527coord: 47..165
e-value: 2.6E-40
score: 135.4
IPR033753Glycine cleavage system H-protein/SimiatePFAMPF01597GCV_Hcoord: 46..164
e-value: 1.2E-40
score: 138.0
NoneNo IPR availableGENE3D2.40.50.100coord: 44..168
e-value: 4.4E-45
score: 152.1
NoneNo IPR availableCDDcd06848GCS_Hcoord: 48..142
e-value: 6.97648E-46
score: 146.525
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 43..164
score: 36.52
IPR000089Biotin/lipoyl attachmentPROSITEPS50968BIOTINYL_LIPOYLcoord: 61..143
score: 27.472
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 45..164

Blast
[Close]
BLAST of TCONS_00061290-protein vs. Swiss-Prot (Human)
Match: GCSH (Glycine cleavage system H protein, mitochondrial OS=Homo sapiens GN=GCSH PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.555e-37
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 0 
Query:   14 HIVRGSNSLLSKSRS----ALPQQKRLISLASQAYQ-----------RYFTKDHEWIDVEGNVGTVGITDHAQAALGELVYVELPEVEDSFDQDDSVGAVESVKAASDVMTPVSGTIVAVNEDLTANPSLINKNAESDAWMFKIELSDADELSEMLDAAGYKAFVDA 165
             +VR   +LL   R+    A P   R   L   A +           R FT+ HEW+  E  +GTVGI++ AQ ALG++VY  LPEV    ++ D  GA+ESVKAAS++ +P+SG +  +NE L  NP L+NK+   D W+ K+ LS+  EL E++    Y+ ++ +
Sbjct:    4 RVVRSVRALLCTLRAVPSPAAPCPPRPWQLGVGAVRTLRTGPALLSVRKFTEKHEWVTTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKYIKS 170
The following BLAST results are available for this feature:
BLAST of TCONS_00061290-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCSH4.555e-3737.72Glycine cleavage system H protein, mitochondrial O... [more]
back to top