TCONS_00061258-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061258-protein
Unique NameTCONS_00061258-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061258-protein ID=TCONS_00061258-protein|Name=TCONS_00061258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MSSPAEQSKPKLIKHGNMETEKDVLSSLVSGACAGALAKTVIAPLDRTKI
MFQVSKTEFSYKTAANIMYKGYKKNGFLSWWRGNSATMARVIPYAAIQFT
THEQMKLYLAGGKKVPLPPEKRFLAGSIAGLVACTFTYPLDLVRARLAIA
QKLKYKSLRHAFRTIYKEEGFMRFYNGYIPTVLGIMPYAGTSFFIYETLK
QKYHEENPTAELTFYHRFGYGAVAGVCGQSFSYPLDIVRRRMQTDGLDGK
GYKYKKLVGTLRYIFLSEGFIKGLYKGLSINWIKGPIAVGVSFATFDKVQ
MLFHRMPDYIT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038428XLOC_038428Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061258TCONS_00061258Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR002167Graves_DC
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005743 mitochondrial inner membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002067Mitochondrial carrier proteinPRINTSPR00926MITOCARRIERcoord: 221..243
score: 45.33
coord: 40..54
score: 46.67
coord: 27..40
score: 37.82
coord: 132..150
score: 44.61
coord: 175..193
score: 41.42
coord: 83..103
score: 35.05
IPR002167Graves disease carrier proteinPRINTSPR00928GRAVESDCcoord: 19..39
score: 33.33
coord: 265..285
score: 47.62
coord: 44..64
score: 28.57
IPR023395Mitochondrial carrier domainGENE3D1.50.40.10coord: 18..303
e-value: 3.3E-81
score: 271.7
IPR023395Mitochondrial carrier domainSUPERFAMILY103506Mitochondrial carriercoord: 22..298
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 22..110
e-value: 1.3E-21
score: 76.2
coord: 212..305
e-value: 1.9E-19
score: 69.3
coord: 119..205
e-value: 1.1E-24
score: 86.1
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 117..202
score: 24.637
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 212..302
score: 16.313
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 22..108
score: 21.247

Blast
[Close]
BLAST of TCONS_00061258-protein vs. Swiss-Prot (Human)
Match: S2542 (Mitochondrial coenzyme A transporter SLC25A42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 2.897e-101
Identity = 159/289 (55.02%), Postives = 199/289 (68.86%), Query Frame = 0 
Query:   21 EKDVLSSLVSGACAGALAKTVIAPLDRTKIMFQVSKTEFSYKTAANIMYKGYKKNGFLSWWRGNSATMARVIPYAAIQFTTHEQMKLYLA---GGKKVPLPPEKRFLAGSIAGLVACTFTYPLDLVRARLAIAQKLKYKSLRHAFRTIYKEEGFMRFYNGYIPTVLGIMPYAGTSFFIYETLKQKYHEENPTAELTFYHRFGYGAVAGVCGQSFSYPLDIVRRRMQTDGLDGKGYKYKKLVGTLRYIFLSEGFIKGLYKGLSINWIKGPIAVGVSFATFDKVQMLFHRM 306
             + VLSSL+SGA AGALAKT +APLDRTKI+FQVS   FS K A  ++Y  Y   GFLS WRGNSATM RV+PYAAIQF+ HE+ K  L    G +   LPP  R  AG++AG  A + TYPLDLVRAR+A+  K  Y ++ H F  I +EEG    Y+G++PTVLG++PYAG SFF YETLK  + E +   +   + R  +GA AG+ GQS SYPLD+VRRRMQT G+   GY    +  TLR I   EG ++GLYKGLS+NW+KGPIAVG+SF TFD +Q+L   +
Sbjct:   30 HRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKRFSAKEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLFAGALAGTTAASLTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVT--GYPRASIARTLRTIVREEGAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHL 316
The following BLAST results are available for this feature:
BLAST of TCONS_00061258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25422.897e-10155.02Mitochondrial coenzyme A transporter SLC25A42 OS=H... [more]
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