TCONS_00061152-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061152-protein
Unique NameTCONS_00061152-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061152-protein ID=TCONS_00061152-protein|Name=TCONS_00061152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSGTPPINIQKETTTPEKRKSGGEFAVPSTPPKHTSPRHHPYFQHHGLTV
PSPIPCRRTRTTSVSRLAADSPLQQGIVVSFCREKGHGFVKPDDEEKAIF
LHISDIEDDYVVRKGDRVEFRTIPMPPKKVERMAVEVHLISLDESAPHER
WDNQPDV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038365XLOC_038365Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061152TCONS_00061152Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011129CSD
IPR002059CSP_DNA-bd
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011129Cold shock domainSMARTSM00357csp_8coord: 75..140
e-value: 1.2E-9
score: 48.0
NoneNo IPR availableGENE3D2.40.50.140coord: 52..155
e-value: 1.3E-17
score: 63.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 75..126
e-value: 6.0E-11
score: 41.9
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 74..139
e-value: 8.88442E-16
score: 66.8334
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 72..139

Blast
[Close]
BLAST of TCONS_00061152-protein vs. Swiss-Prot (Human)
Match: CHSP1 (Calcium-regulated heat-stable protein 1 OS=Homo sapiens GN=CARHSP1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.761e-28
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 0 
Query:   47 GLTVPSPIPCRRTRTTSVSRLAADSPLQQGIVVSFCREKGHGFVKPDDEEKAIFLHISDIEDDYVVRKGDRVEFRTIPMPPKKVERMAVEVHLISLDESAPHERWDN 153
            G  VPSP+P RRTRT S +  A+  P+ +G+   FCR KGHGF+ P D    IFLHISD+E +YV  +GD V ++   +PPK  +  AVEV +  L     HE W  
Sbjct:   36 GNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSG 142
The following BLAST results are available for this feature:
BLAST of TCONS_00061152-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSP11.761e-2845.79Calcium-regulated heat-stable protein 1 OS=Homo sa... [more]
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