TCONS_00061029-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061029-protein
Unique NameTCONS_00061029-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061029-protein ID=TCONS_00061029-protein|Name=TCONS_00061029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
NIAFTIPYNGGIIPSTFFLVVGSILYEKGATMSLVLPEKFQHILRVMNTN
IDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLIT
IMQNPRQYKIPDYFLNRKKDIKDGKYSQVLANGLDNKLREDLERLKKIRA
HRGLRHYWGLRVRGQHTKTTGRKGRTVGVSKKKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038312XLOC_038312Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061029TCONS_00061029Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 32..111
e-value: 1.6E-38
score: 130.2
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 138..184
e-value: 9.5E-22
score: 75.8
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 29..184
e-value: 6.5E-37
score: 124.4
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 45..173
e-value: 4.0E-54
score: 182.3
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 43..182
score: 22.613
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 46..176
score: 33.825
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 152..165
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 44..183

Blast
[Close]
BLAST of TCONS_00061029-protein vs. Swiss-Prot (Human)
Match: RS18 (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 275.404 bits (703), Expect = 3.489e-96
Identity = 127/152 (83.55%), Postives = 148/152 (97.37%), Query Frame = 0 
Query:   32 MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRKGRTVGVSKKK 183
            MSLV+PEKFQHILRV+NTNIDG+ KI +A+T+IKGVGRR++++ L+KADID+ KRAGEL+++EVER+ITIMQNPRQYKIPD+FLNR+KD+KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH+WGLRVRGQHTKTTGR+GRTVGVSKKK
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00061029-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS183.489e-9683.5540S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
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