TCONS_00060970-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060970-protein
Unique NameTCONS_00060970-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060970-protein ID=TCONS_00060970-protein|Name=TCONS_00060970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
YSDIQSGKICLVGMEDELGVVDTVDNSRARANSDRRTCWVCFGTDEDDPG
AKWINPCRCRGTTKWVHDTCLQRWFDEKQHGNPATQVFCPQCNTAYTISY
PPLSPLLVLIDYGEKAANRVAPVAAAGAVVGSLYWSAVTFGAVTVMQILG
HKEGLQVMEGADPLFLLVALPTIPLGLILGKMIRWEDKVLHLWREYSPKW
EFLNKIFGGGEENNGAIRRQPLENDNQIDFVNSTRVLCGALMLPTFATAV
GNYLFKRVQSPLKRTFMGGVSFIFVKGMIKIYYRQHQYVRLAKRKIEDFQ
GSTSV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038273XLOC_038273Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060970TCONS_00060970Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 37..93
e-value: 4.5E-18
score: 76.0
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 38..92
e-value: 2.2E-14
score: 53.2
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 30..99
score: 20.391
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 31..99
e-value: 8.1E-18
score: 63.6
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 32..97

Blast
[Close]
BLAST of TCONS_00060970-protein vs. Swiss-Prot (Human)
Match: MARH5 (E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 3.828e-115
Identity = 151/264 (57.20%), Postives = 194/264 (73.48%), Query Frame = 0 
Query:   36 RTCWVCFGTDEDDPGAKWINPCRCRGTTKWVHDTCLQRWFDEKQHGNPATQVFCPQCNTAYTISYPPLSPLLVLIDYGEKAANRVAPVAAAGAVVGSLYWSAVTFGAVTVMQILGHKEGLQVMEGADPLFLLVALPTIPLGLILGKMIRWEDKVLHLWREYSPKWEFLNKIFGGGEENNGAIRRQPLENDNQIDFVNSTRVLCGALMLPTFATAVGNYLFKRVQSPLKRTFMGGVSFIFVKGMIKIYYRQHQYVRLAKRKIEDF 299
            R+CWVCF TDEDD  A+W+ PCRCRG+TKWVH  CLQRW DEKQ GN   +V CPQCN  Y I +P L P++ ++D  ++  ++  P AAAG +VGS+YW+AVT+GAVTVMQ++GHKEGL VME ADPLFLL+ LPTIP+ LILGKMIRWED VL LWR+YS K + LN IF G       + R P E +   D V++TR+LCGAL+ PT AT VG  +F  V S L+RT +GG++F+ +KG  K+Y++Q QY+R A RKI ++
Sbjct:   12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILNSIFPG---IGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTILGGIAFVAIKGAFKVYFKQQQYLRQAHRKILNY 272
The following BLAST results are available for this feature:
BLAST of TCONS_00060970-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARH53.828e-11557.20E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens... [more]
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