TCONS_00060915-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060915-protein
Unique NameTCONS_00060915-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060915-protein ID=TCONS_00060915-protein|Name=TCONS_00060915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
LSYLPPWHVTSSDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQ
CNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIR
PYSCGVCGKAFYRKVDVRRHASVHMSY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038245XLOC_038245Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060915TCONS_00060915Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 46..68
e-value: 0.0014
score: 27.9
coord: 18..40
e-value: 0.17
score: 21.0
coord: 74..96
e-value: 1.9E-4
score: 30.7
coord: 102..124
e-value: 0.02
score: 24.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 48..68
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 104..124
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 20..40
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 76..96
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 102..127
score: 11.655
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 46..73
score: 14.877
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 74..101
score: 16.186
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 18..45
score: 11.344
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 54..111
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 16..68
NoneNo IPR availableGENE3D2.30.30.380coord: 67..81
e-value: 7.2E-12
score: 44.8
NoneNo IPR availableGENE3D3.30.160.60coord: 8..37
e-value: 4.9E-7
score: 29.1
NoneNo IPR availableGENE3D3.30.160.60coord: 53..66
e-value: 1.5E-11
score: 43.7
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 102..124
e-value: 1.2E-4
score: 22.3
coord: 74..96
e-value: 8.4E-7
score: 29.0
NoneNo IPR availableGENE3D3.30.160.60coord: 92..126
e-value: 3.5E-17
score: 61.6
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 46..68
e-value: 1.4E-4
score: 22.3
coord: 18..40
e-value: 0.0015
score: 19.1
NoneNo IPR availableGENE3D2.20.25.10coord: 38..52
e-value: 1.1E-6
score: 28.0
NoneNo IPR availableGENE3D3.30.160.60coord: 82..91
e-value: 2.4E-10
score: 40.1

Blast
[Close]
BLAST of TCONS_00060915-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.189e-36
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:   19 QCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 120
            +C  C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+SC +C K F RKVD+RRH
Sbjct:  221 ECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRH 322

HSP 2 Score: 75.0998 bits (183), Expect = 4.541e-17
Identity = 38/114 (33.33%), Postives = 59/114 (51.75%), Query Frame = 0 
Query:   12 SDEIKKHQCEYCLKWFQRSSSLSNH-RLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVH 124
            S  +  + C  C K F     L  H R  H  ++ + C+ C  +F     L +H   HS  + ++C +CGK F +SS + TH   H+  RPY C  CGK F++K D+++H  +H
Sbjct:  157 SPGMDAYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHTHVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIH 270
The following BLAST results are available for this feature:
BLAST of TCONS_00060915-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI1B1.189e-3654.90Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1... [more]
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