TCONS_00060546-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060546-protein
Unique NameTCONS_00060546-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060546-protein ID=TCONS_00060546-protein|Name=TCONS_00060546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=839bp
MREIQVRLQTDENRTRSKDRNLNFLHDVIKEMASFSPQLASRAFDSSSNK
SSQDVCGYCGELSYDVELKTLPCLHSFCVSCLQRRVVRTLTGDLNLSCPS
CHRDVRLEGEDGVNSLPSSSWIRDYFADVVTGDRESTPPKPSPCERCSDF
PSPPTRRSIDSLPPGLTNFSTPPSTSSSVATSLATGLSKLAIGAVHQHRV
EQKTFPKQVQPQHHSFVPSLHSTTLSAGRSPVFCELHSREYQYYCNYCLV
PVCRDCINAEHNGHNFGYFNPATAFEKTTQGTAMNNNQQQTSEKAFRKLV
VDARVEIKAMEDALISVKKMSEDVETRSANVTSDVKTTVKRHIQAVEERE
KDLLRRIECIRQVKGKALHLQSEQLKLAISRLRIATDSSELSLEQCSEED
FTKTTENIVNALKGVKNQQSLLHPCEDDSFLFTPPDSALETALTSMGLVS
SSAYPPLCTAIGEGLRRGICGKASMFTVIAKDHQGANRCVGGDVVRVSIT
SPDGREMVGEIYDRQNGNYSVTYRPQCEGEHIINVTIRGQPIMDSPFKLQ
IKLGRNYASVGQPIFHVGSEGEDGGQLCRPWGVCCDRDGNIIVADRSNNR
IQVFDSKGIFVHKFGSAGSRNGQFDRPAGVCVDSQNRIIVADKDNHRIQV
FKIDGTFVLKFGERGSKNSQFTYPWDCAANRENQILVSDTRNHRVQLFSS
EGIFLNKYGFENSFWKHFDSPRGVAFNHEGHMVVTDFNNHRLLVIHQDFQ
TARYLGTEGDKNGQFLRPQGVAIDHEGNIIVADSRNHRIQIFQPNGNFLC
KFGTYGESVGQLDRPSGLCVTPDGIILVVDFGNNRIQAF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038084XLOC_038084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060546TCONS_00060546Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001298Filamin/ABP280_rpt
IPR001841Znf_RING
IPR000315Znf_B-box
IPR001258NHL_repeat
IPR013783Ig-like_fold
IPR017868Filamin/ABP280_repeat-like
IPR0110426-blade_b-propeller_TolB-like
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR013017NHL_repeat_subgr
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 343..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..163
NoneNo IPR availableCDDcd14954NHL_TRIM71_likecoord: 555..839
e-value: 1.44006E-177
score: 514.789
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 575..839
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 227..284
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 54..106
IPR001298Filamin/ABP280 repeatSMARTSM00557flmn_3coord: 454..554
e-value: 4.6E-25
score: 99.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 56..101
e-value: 2.9E-5
score: 33.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 56..102
score: 10.704
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 56..105
e-value: 5.55589E-5
score: 40.892
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 232..266
e-value: 9.9E-9
score: 35.1
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 229..269
score: 9.101
IPR001258NHL repeatPFAMPF01436NHLcoord: 718..744
e-value: 7.9E-5
score: 22.4
coord: 624..651
e-value: 1.9E-10
score: 40.2
coord: 812..839
e-value: 5.7E-7
score: 29.2
coord: 765..792
e-value: 1.0E-8
score: 34.6
coord: 671..696
e-value: 4.6E-5
score: 23.1
coord: 577..604
e-value: 3.7E-9
score: 36.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 451..559
e-value: 2.4E-26
score: 91.4
IPR017868Filamin/ABP280 repeat-likePFAMPF00630Filamincoord: 457..548
e-value: 3.6E-20
score: 72.6
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 450..551
score: 24.856
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 560..660
e-value: 4.0E-20
score: 71.6
coord: 661..754
e-value: 2.1E-14
score: 52.9
coord: 755..839
e-value: 4.7E-16
score: 58.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..279
e-value: 1.9E-15
score: 56.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 73..82
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 752..795
score: 16.386
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 611..654
score: 17.455
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 567..607
score: 17.722
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 658..701
score: 15.009
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 705..748
score: 11.822
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 799..839
score: 13.179
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 455..551

Blast
[Close]
BLAST of TCONS_00060546-protein vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 327/608 (53.78%), Postives = 421/608 (69.24%), Query Frame = 0 
Query:  233 FCELHSRE-YQYYCNYCLVPVCRDCINAEHNGHNFGYFNPATAFEKTTQGTAMNNNQQQTSEKAFRKLVVDARVEIKAMEDALISVKKMSEDVETRSANVTSDVKTTVKRHIQAVEEREKDLLRRIECIRQVKGKALHLQSEQLKLAISRLRIATDSSELSLEQCSEEDFTKTTENIVNALKGVKNQQSLLHPCEDDSFLFTPPDSALETALTSMGLVSSSAYPPLCTAIGEGLRRGICGKASMFTVIAKDHQGANRCVGGDVVRVSITSPDGREMVGEIYDRQNGNYSVTYRPQCEGEHIINVTIRGQPIMDSPFKLQIKLGRNYASVGQPIFHVGSEGEDGGQLCRPWGVCCDRDGNIIVADRSNNRIQVFDSKGIFVHKFGSAGSRNGQFDRPAGVCVDSQNRIIVADKDNHRIQVFKIDGTFVLKFGERGSKNSQFTYPWDCAANRENQILVSDTRNHRVQLFSSEGIFLNKYGFENSFWKHFDSPRGVAFNHEGHMVVTDFNNHRLLVIHQDFQTARYLGTEGDKNGQFLRPQGVAIDHEGNIIVADSRNHRIQIFQPNGNFLCKFGTYGESVGQLDRPSGLCVTPDGIILVVDFGNNRIQAF 839
            FC+ H  E    YC+ C VP+CR+C    H GH+F Y   A                 Q S     +L+ DA+   +A++ ++   + ++E VE ++  V S+VK    RH +A+EERE +LL ++E IRQVK K+L+LQ E+L+  +++L     + +  LE+    D     + ++  ++ +K  +SLL P EDD  +FTPPD AL  A+ S G VSS A+ PL  A G+GL+R + GK + FTVI  DH G  R  GGD++   +  PDG     E+ D+QNG Y V+YRPQ EGEH+++VT+  Q I +SPFK+ +K GR+Y  +G P    GSEG+  G+LCRPWGV  D++G IIVADRSNNRIQVF   G F HKFG+ GSR GQFDRPAGV  D+  RI+VADKDNHRIQ+F  +G F+LKFGE+G+KN QF YPWD A N E +ILVSDTRNHR+QLF  +G+FLNKYGFE + WKHFDSPRGVAFNHEGH+VVTDFNNHRLLVIH D Q+AR+LG+EG  NGQFLRPQGVA+D EG IIVADSRNHR+Q+F+ NG+FLCKFG  G   GQ+DRPSG+ +TPDG+I+VVDFGNNRI  F
Sbjct:  277 FCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEAL----------------QDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00060546-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN410.000e+053.78E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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