TCONS_00060422-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060422-protein
Unique NameTCONS_00060422-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060422-protein ID=TCONS_00060422-protein|Name=TCONS_00060422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1397bp
XGTENPYAALANVSGAFDDFSLLETPPKQKKKPLKISLDPEVDIEDMDEE
EVFQLEFKQHKRHYYMEKFDMDIVEDSAIQKICLEYIRALQWIAHYYFNG
LQSWSWYYPYHYAPFISDVANFIVQDLHFEIGHPFKPFEQLLAVLPSASR
KLLPKAFQDLMVMDNSAIIDFYPPDFRTDLNGKQQEWEAVVLIPFIDETR
LLRAMEECYLRLTDEEKERNSFGKCLKYTYDPNLNFIYPTSYPGVFEDVN
RCKAHKEDIHREQFHLDTRYLKKGLMEGTQLDVYFPGFPTMRHLRHKSYL
KKAGVKVFQYNSRSENTIVKLIGNEHEDFQRLAQSLVGQSAHVEWPYLVE
AKVVSVANDSVKYFMDNETRQLTSELVEHGSYDTVKREMKSVSSFLFNRK
GIDIGDCDVLVEAKLLLGKRYFCTKDGSVKLEREYSKNTSFYAAKTVVKN
LTVHKSSSREYKTVQSLYPVGSTCFMMASEFYGCAGEVFDFEEETQKVRV
ALKPPVEPNYDDVIQDYDRLSVCYLHEHIVVQKLHISAYVLNRITGDLFI
HEHEHESRSSGTNIGLKIKYSGRNKEAVGFARRVNDTWTFSPVTVDIVRE
YIDRFPEVFETLGRRGHKDNFLVSDFSKRKNFLGDVKGFLKSLPCNKTET
VRCGSNVLDKPVIQRLNEKVTALKEGKKSEKVTKVKVKPNCIFRPTDQFG
KLSPDPKAEFFLLDRVINVDKGLTVPLGLRGSVVGIYHVPIDENDQFSPT
EIRYEVMFDEEFLGANDVRHVKERGYFMYGYSLLNLSYGERKLRKKDNTQ
PIDPLTEFKKRITDPSKTTGKSSTPNNKGPYRGRLGPNRDNAQQRTPEPP
QYWLKDKYQSPRGKQSPHGSGHKSHGTGGARKKENTATPPTTTSGTDFLN
MWKELKKEENQSTPQKPQPSQQQQTTPQFVTQSSGKPQESVDQDATTAIH
QLLNINKTSQQPVVTTPPQSSVQQPIRQLLQRPQQPQTIAMLQQMQHPQQ
MVAMQQRMPQALYQPPTHQHPPAMVPGSALPPFMQPSMILLQCCNQRKLL
PPNYLFTKHPEGFKAFISLDGRHISGQICPTQQQAMENVATIALQQLTGV
ATAFSPAFVQPVVQPPQPSLQQHQPQANYHMQRQPSPAQNNIIRQSQSDS
NLSSTKENKTPLRPNPFVPHQVSVKNTKWEESKQPEVHGPPPPINVKAEC
DLKEMLGIQARSSPDPMQQSEGELKKMLGIVGKPSTSPQPPDSPGQDILK
SIGVTRSSPALTATSMENQLTDDMKLMNLIGIKPNSSTSPPTNNVGRPLH
QTASEPIMIQERPTQQVNIPKQSTAAHSSASASQSSSSPLLQTRTQAAKP
SPSNSSRSSPALSTASSNRSQNSSPAPGNATKKPILLAPTFFGAKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038000XLOC_038000Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060422TCONS_00060422Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.20coord: 1025..1105
e-value: 4.7E-7
score: 29.5
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 1029..1097

Blast
[Close]
BLAST of TCONS_00060422-protein vs. Swiss-Prot (Human)
Match: XRN1 (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 575.089 bits (1481), Expect = 2.962e-178
Identity = 296/770 (38.44%), Postives = 470/770 (61.04%), Query Frame = 0 
Query:   45 EDMDEEEVFQLEFKQHKRHYYMEKFDMDIVEDSAIQKICLEYIRALQWIAHYYFNGLQSWSWYYPYHYAPFISDVANFIVQDLHFEIGHPFKPFEQLLAVLPSASRKLLPKAFQDLMVMDNSAIIDFYPPDFRTDLNGKQQEWEAVVLIPFIDETRLLRAMEECYLRLTDEEKERNSFGKCLKYTYDPNLNFIYPTSYPGVFEDVNRCKAHKEDIHREQFHLDTRYLKKGLMEGTQLDVYFPGFPTMRHLRHKSYLKKAGVKVFQYNSRSENTIVKLIGNEHED---FQRLAQSLVGQSAHVEWPYLVEAKVVSVANDSVKYFMDN--ETRQLT-------SELVEHGSYD--TVKREMKSVSSFLFNRKGIDIGDCDVLVEAKLLLGKRYFCTKDGSVKLEREYSKNTSFYAAKTVVKNLTVHKSSSREYKTVQSLYPVGSTCFMMASEFYGCAGEVFDFEEETQ--KVRVALKPPVEPNYDDVIQDYDRLSVCYLHEHIVVQKLHISAYVLNRITGDLFIHEHEHES--RSSGTNIGLKIKYSGRNKEAVGFARRVNDTWTFSPVTVDIVREYIDRFPEVFETLGRRGHKDNFLVSDFSKRKNFLG-----DVKGFLKSLPCNKTETVRCGSNVLDKPVIQRLNEKVTALKEGKKSEKVTKVKVKPNCIFRPTDQFGKLSPDPKAEFFLLDRVINVDKGLTVPLGLRGSVVGIYHVPIDENDQFSPTEIRYEVMFDEEFLGANDVRHVKERGYFMYGYSLLNLSYGER 791
            ++ +++++F+ EF+Q+KR YYM K  +D+V D  +      Y++A+QWI HYY++G+QSWSWYYPYHYAPF+SD+ N     +HFE+G PFKPFEQLLAVLP+AS+ LLP  +Q LM  ++S II++YPPDF+TDLNGKQQEWEAVVLIPFIDE RLL AME C   L  EE++RN   +CL   YD +  FIYP+ +P  F  + RC    + I  + + +D    K  +    Q  +YF GFPT++H+RHK +LKK+GV+VFQ +SR EN +++++ +   D    + +A S++G+S  V WP+L EA+VV+V++   K++++    T++L        S++V  G  +     +E++ +S     RKGI I +   +V A+LL G++Y   ++G V+LE+++SK    +  +T+VK++    S     KT+  L+P+ S  FM+ + +YGC GEV D  +     ++RV    P EPN D +IQ+  + S+ Y   +++  +L +S Y+++R TG +FI      +       N+GL +K++ +N+E  G+ ++V   W +S     ++ EY++R PE+F  + +   +D F   D    +N  G     ++  +LK  P +      C   +LD  +++++ E+V   K+ K ++KV +V VKP+ ++RP +Q   + PD  AEF L DRV+NV +  +VP+GLRG+++GI              ++ +EV+FDEEF G   +R    RGY +   +L+NLS+G R
Sbjct:  418 DETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDIN--KNKITRIDQKALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFDSRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV-RVTVKPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGI-------KGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR 1177
The following BLAST results are available for this feature:
BLAST of TCONS_00060422-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRN12.962e-17838.445'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE... [more]
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