TCONS_00060363-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060363-protein
Unique NameTCONS_00060363-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060363-protein ID=TCONS_00060363-protein|Name=TCONS_00060363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNGSKEKDYDFIYTLVVLGNINTGKRIVHAKICHMENESWLGDFVVLNKQ
LETGERLKLRLSLETGGERWTHRCISDRKFATYQGIFLVYNYCLRKTFDI
LNDWLDAIKKRGPEDSIIMIVGNKYVHSNMTDEREVTFEEGHKFAYQNGL
SFMEITDHNQQTLVDEKFMDLVCNVHEKQKDKPIVEKQRTQETLSSNRTK
CTII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037985XLOC_037985Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060363TCONS_00060363Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 13..178
e-value: 2.3E-5
score: -42.7
NoneNo IPR availableGENE3D3.40.50.300coord: 69..175
e-value: 6.2E-15
score: 54.5
NoneNo IPR availablePROSITEPS51419RABcoord: 8..204
score: 14.072
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..175
e-value: 2.0E-14
score: 53.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..188

Blast
[Close]
BLAST of TCONS_00060363-protein vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 1.352e-16
Identity = 52/206 (25.24%), Postives = 108/206 (52.43%), Query Frame = 0 
Query:    3 GSKEKDYDFIYTLVVLGNINTGKRIVHAKIC----HMENESWLG-DFVVLNKQLETGERLKLRLSLETGGERWTHRCISDRKFATYQGIFLVYNYCLRKTFDILNDWLDAIKKRGPEDSIIMIVGNKYVHSNMTDEREVTFEEGHKFAYQNGLSFMEITDHNQQTLVDEKFMDLVCNVHEKQKDKPIVEKQRTQETLSSNRTKCTI 203
            G+++ +YD+++ +V++G+   GK  + ++      ++E++S +G +F   + Q++ G+ +K ++    G ER+  R I+   +    G  LVY+     T++ +  WL  ++     + +IM+VGNK   S++   R V  +E   FA +N LSF+E T     T V+E F +++  ++     K I ++    E+  +N    ++
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERY--RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK---SDLRHLRAVPTDEARAFAEKNNLSFIE-TSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISV 200
The following BLAST results are available for this feature:
BLAST of TCONS_00060363-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11B1.352e-1625.24Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
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