TCONS_00060213-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060213-protein
Unique NameTCONS_00060213-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060213-protein ID=TCONS_00060213-protein|Name=TCONS_00060213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
SLIFWTQESHFVIFFETELTIHEKGEEIDIMALCCVVIGCSNGSYRLNKW
KSLQCEEHRQIHELCNCDPPFKLHPFPTVKKDYELRMKWIKVINRADDTT
KGFFEPGRNARVCSIHFKDGEPSSDNPLPVLSMGYDGAEKRALFLSPPST
TAISRKRKSSNNHNITAAGGEGSSSTTTSSRLQQKQRLSSSVIKITLPNP
KKDTAQSTLTVRETPTASIMSKNMLSTPVHQPHHPKASTTTSMLPNELES
NVDLIITKKTPECIKRINKSIRSSIKKTKMHNSMKTVSAANSPVVKPLFE
TLLKNNKKCLFYTNITNLELFHQLHNNVKGFVRSRFYAKKRTLANPFNKV
HTPKKPGPDRKLNSVDELLLTLMKLRLGLLFEDLGDRFGVSKSCASKIFQ
SWIRALSLCLRSLIYLPEEENIRNTTPSRFRGFHRLNGIIDCTEVFIETP
KSLELQSATWSEYKHHNTAKILISVLPNSLISYVSEPYTGRISDKAIVNE
TEFLDTLPPYCSLMTDKGFNIEQECAQKSIHLIIPPGRRGTSQMTEAQLK
KTAHIAKVRILVEQVIRRVKTFQILSNEVQISLLPHLNDIVIVCCALSNL
RKPIMK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037879XLOC_037879Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060213TCONS_00060213Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006612Znf_C2CH
IPR027806HARBI1_dom
IPR027805Transposase_HTH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006612Zinc finger, C2CH-typeSMARTSM00980THAP_2coord: 33..138
e-value: 0.006
score: 24.4
IPR006612Zinc finger, C2CH-typePFAMPF05485THAPcoord: 35..120
e-value: 1.4E-7
score: 32.3
IPR006612Zinc finger, C2CH-typePROSITEPS50950ZF_THAPcoord: 31..132
score: 14.048
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 440..599
e-value: 5.2E-43
score: 146.4
IPR027805Transposase, Helix-turn-helix domainPFAMPF13613HTH_Tnp_4coord: 360..411
e-value: 1.1E-16
score: 60.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..214
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 31..125

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060213-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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