TCONS_00059163-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059163-protein
Unique NameTCONS_00059163-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059163-protein ID=TCONS_00059163-protein|Name=TCONS_00059163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MKPKFAVLGLLMIFACSSVCLYLLSSLLPANNGRYKLGFPSNLENLKSLV
EVMKRYKEDHFYSVMIVFCAAYLYKQTFSIPGSVFMNLLAGALFGMPLSF
VLACLLSASGATCCFLLSMVFGRSILMHYFKEKVFHLQTKLDENSDGLFF
YLLCVRLFPMTPNWLLNMTFPILGVPMHLFFPSVFIGLMPYNFICCQTGC
ILSEISSVNDIMTTGTILKLTLVAMVVALPGYLMRRLKKVKKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037260XLOC_037260Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059163TCONS_00059163Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032816SNARE_assoc
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032816SNARE associated Golgi proteinPFAMPF09335SNARE_assoccoord: 80..199
e-value: 2.7E-16
score: 60.0
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 6.0

Blast
[Close]
BLAST of TCONS_00059163-protein vs. Swiss-Prot (Human)
Match: TM41A (Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.568e-74
Identity = 122/247 (49.39%), Postives = 174/247 (70.45%), Query Frame = 0 
Query:    1 MKPKFAVLGLLMIFACSSVCLYLLSSLLPANN--------GRYKLGFPSNLENLKSLVEVMKRYKEDHFYSVMIVFCAAYLYKQTFSIPGSVFMNLLAGALFGMPLSFVLACLLSASGATCCFLLSMVFGRSILMHYFKEKVFHLQTKLDENSDGLFFYLLCVRLFPMTPNWLLNMTFPILGVPMHLFFPSVFIGLMPYNFICCQTGCILSEISSVNDIMTTGTILKLTLVAMVVALPGYLMRRLKK 239
            M+P   +LGLL++FA  +  LYLLS+ LP           G   L FPS+L  L+ L EV++ Y+++H   V ++FC AYLYKQ F+IPGS F+N+LAGALFG  L  +L C+L++ GATCC+LLS +FG+ +++ YF +KV  LQ K++EN + LFF+LL +RLFPMTPNW LN++ PIL +P+  FF SV IGL+PYNFIC QTG ILS ++S++ + +  T+ KL  +AMV  +PG L+++  +
Sbjct:    1 MRP---LLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIKKFSQ 244
The following BLAST results are available for this feature:
BLAST of TCONS_00059163-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM41A5.568e-7449.39Transmembrane protein 41A OS=Homo sapiens GN=TMEM4... [more]
back to top