TCONS_00057381-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057381-protein
Unique NameTCONS_00057381-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057381-protein ID=TCONS_00057381-protein|Name=TCONS_00057381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
MSSSSKRSWKLQEFVAHSSNVTCLSIGPSSGRVMVTGGEDKKVNMWAIGK
PNVILSLSGHTTPVECVQFNNSEELVCAGSSSGALKIWDLDSAKVVRTLT
GHKANIKSLDFHPYGEFIASGSMDTTVRLWDIRRKGCIVSYKGHTNTVNH
LRFSPDGRWVISAGEDGIVKLWDLNAGKLLADFILHTGPVNCVEFHPREF
LIATGSSDRTVKYWDLETFGLISSSDLEASPVRTVCFHPEGVCLFSGGQD
SLRAHLWEPNVCFDSQTLGWGKITDMAFSSNQLIGASYQATNVSVWVSSM
NNIETMAEKANAETYVGKVEVNQSVQQINSRKHSPPRKSFPARPKTQSSK
SRKTEKQSQQSNEEFSKAVDDKLSNPAANYDNIFQPSTALSRSPESKRKQ
TSEPVTRKQAPETAPSKPVEPPPKAEPTNNRYKVENISKPAPQKAFYHPS
DLSQPQTPFQPPDQDLPPENNEFPVQYQQPTQRPVTTQKAKKTSIVPPPQ
PQAPPSAVEEKMHGLKLNDFSTKNEKGRVSTPNDEESTLEVLGKSHGSLC
QIMQARLQNLSLVSHLWTEGDIKGAINTASSMSDLSVFVDLVNVLVLKPA
LWNLELCGVILPQLKNLLASNYESYIESASASIKLILKNFAQLIKNTLSI
PPGALGVDLSREERHNKCNKCNIALLEIRSVVSGRSQVSGRIGSLCRELS
LALSVMD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036151XLOC_036151Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057381TCONS_00057381Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR028021Katanin_C-terminal
IPR019775WD40_repeat_CS
IPR026962Katanin_bsu1
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0051013microtubule severing
Vocabulary: Cellular Component
TermDefinition
GO:0008352katanin complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051013 microtubule severing
cellular_component GO:0008352 katanin complex
molecular_function GO:0008017 microtubule binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 202..216
score: 38.08
coord: 160..174
score: 35.77
coord: 118..132
score: 41.58
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 92..131
e-value: 1.3E-11
score: 54.6
coord: 218..258
e-value: 0.73
score: 17.9
coord: 7..47
e-value: 1.0E-4
score: 31.7
coord: 50..89
e-value: 1.8E-6
score: 37.5
coord: 176..215
e-value: 4.5E-9
score: 46.1
coord: 134..173
e-value: 1.9E-11
score: 54.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 10..46
e-value: 0.0014
score: 19.3
coord: 179..215
e-value: 1.1E-4
score: 22.8
coord: 95..131
e-value: 1.7E-10
score: 41.2
coord: 54..89
e-value: 7.3E-5
score: 23.4
coord: 137..173
e-value: 1.1E-10
score: 41.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 57..98
score: 14.986
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 141..182
score: 17.76
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 99..140
score: 17.092
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 183..224
score: 14.719
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 14..56
score: 12.012
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..104
e-value: 1.2E-26
score: 93.2
NoneNo IPR availableGENE3D1.10.10.670coord: 172..204
e-value: 5.7E-17
score: 60.9
NoneNo IPR availableGENE3D2.40.50.140coord: 138..171
e-value: 6.2E-18
score: 63.7
NoneNo IPR availableGENE3D2.80.10.50coord: 105..137
e-value: 1.3E-16
score: 60.4
NoneNo IPR availableGENE3D2.140.10.20coord: 205..340
e-value: 2.1E-15
score: 56.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..507
NoneNo IPR availableCDDcd00200WD40coord: 11..296
e-value: 1.69999E-68
score: 227.218
IPR028021Katanin p80 subunit, C-terminalPFAMPF13925Katanin_con80coord: 544..703
e-value: 5.1E-50
score: 169.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 160..174
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 118..132
IPR026962Katanin p80 subunit B1HAMAPMF_03022Katanin_p80_B1coord: 5..706
score: 21.502
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 14..251
score: 60.27
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 10..283

Blast
[Close]
BLAST of TCONS_00057381-protein vs. Swiss-Prot (Human)
Match: KTNB1 (Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 297/714 (41.60%), Postives = 439/714 (61.48%), Query Frame = 0 
Query:    5 SKRSWKLQEFVAHSSNVTCLSIGPSSGRVMVTGGEDKKVNMWAIGKPNVILSLSGHTTPVECVQFNNSEELVCAGSSSGALKIWDLDSAKVVRTLTGHKANIKSLDFHPYGEFIASGSMDTTVRLWDIRRKGCIVSYKGHTNTVNHLRFSPDGRWVISAGEDGIVKLWDLNAGKLLADFILHTGPVNCVEFHPREFLIATGSSDRTVKYWDLETFGLISSSDLEASPVRTVCFHPEGVCLFSGGQDSLRAHLWEPNVCFDSQTLGWGKITDMAFSSNQLIGASYQATNVSVWVSSMNNIETMAEKANAETYVGKVEVNQSVQQINSRKHSPPRKSFPARPKTQSSKSRKTEKQSQQSNEEFSKAVDDK--------LSNPAANYDNIFQPSTALSRSPESKRKQTSEPVTRKQAPETAPSKPVEPPPKAEPTNNRYKVENISKPAPQKAFYHPSDLSQPQTPFQPPDQDLPPENNEFPVQYQQPTQRPVTTQKAKKTSIVPPPQPQAPPS---AVEEKMHGLKLNDFSTKNEKGRVSTPNDEESTLEVLGKSHGSLCQIMQARLQNLSLVSHLWTEGDIKGAINTASSMSDLSVFVDLVNVLVLKPALWNLELCGVILPQLKNLLASNYESYIESASASIKLILKNFAQLIKNTLSIPPGALGVDLSREERHNKCNKCNIALLEIRSVVSGRSQVSGRIGSLCRELSLALSVMD 707
            +K +WKLQE VAH+SNV+ L +G +SGR++ TGG+D +VN+W+I KPN I+SL+GHT+PVE V+ N  EEL+ AGS SG++++WDL++AK++RTL GHKANI SLDFHPYGEF+ASGS DT ++LWDIRRKGC+  Y+GH+  V  LRFSPDG+W+ SA +D  VKLWDL AGK++++F  HTGPVN VEFHP E+L+A+GSSDRT+++WDLE F ++S  + E  PVR+V F+P+G CL+SG QDSLR + WEP  CFD   + WGK+ D+A  ++QLIG ++  +NVS +V  +  +      A        V+ ++ + Q      +P R+ +  RP T  SK ++  KQ+ +S      + DD+        + N A +Y+ IFQP  ++SR+P            R+  P  AP           P ++    +  +KP+P                           + +FPV   +   RP          +   P P+A P+   A   +  GLK +DF    +  + +   DE++  ++  K H ++C ++ +R +NL  V  +WT GDIK ++++A +++DLSV VDL+N++  K +LW L+LC  +LPQ++ LL S YESY+++   S+KLIL+ F  LI + L+ PP ++GVD+SREER +KC  C   L  I  +V  +S +SGR GS  REL L ++ +D
Sbjct:    7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVAR-----DPVQDHRPLAQPLPNPSAPLRRIY-ERPSTTCSKPQRV-KQNSESERRSPSSEDDRDERESRAEIQN-AEDYNEIFQPKNSISRTPP-----------RRSEPFPAP-----------PEDDAATAKEAAKPSPAM-------------------------DVQFPVPNLEVLPRPPV--------VASTPAPKAEPAIIPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQI-RKGHDTMCVVLTSRHKNLDTVRAVWTMGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDMLAAPP-SVGVDISREERLHKCRLCYKQLKSISGLVKSKSGLSGRHGSTFRELHLLMASLD 655
The following BLAST results are available for this feature:
BLAST of TCONS_00057381-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KTNB10.000e+041.60Katanin p80 WD40 repeat-containing subunit B1 OS=H... [more]
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