TCONS_00056787-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056787-protein
Unique NameTCONS_00056787-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056787-protein ID=TCONS_00056787-protein|Name=TCONS_00056787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
LSFFVFLFQGVVSDTVMDFFSKSHTVKPLSKSNLTLIEVDEDLESLSKET
KEDAQTAILKKISKKCTTDDLCYIVRLIKHDLRTNCGAKHFLDALDENAY
EAWQASSDLKQVIEKWQANKDESSMIPGLKKTISIKATLMTPVKPMLAEA
CKSIEQAFKKCPNGMYSEIKYDGERVQIHKDGEKFQYFSRSLKPVQPHKI
AEVKDFIPKACPQGESLILDGEVLLMDSNTNQPLPFGTLGIHKKAKFKDA
TVCYVIFDILQFNDENLMKRSVQERRKILQDNVTEIPGRIVHSEMKVVTK
KQELQSMLKKCFAQNLEGLVLKDIKGKYEPGKRHWLKVKKDYLQKGAMAD
TADLVVLGAYIGTGNKGGLMSVFLMGCYDESRGIWVTVTKCGNGHDDDTL
KKLQKQLKMQKISKDFSKVPMWLDVDRGLVPDYVIADPKNSQIWEITGAE
FSQSSTHTADGISIRFPRVTRIRNDKDWKTATSLKRLKVLYKESKETTDV
EMPSTSTNTTKAKTEKKSPKKIKEEDQTSPAKKEKKLKRKSEESTSTLKN
EVEEDSSKKKKKKDDDDDNDGTTTKQKKACTFGEKCYRTKNGEHMKEYSH
EKNEVENEKDQEMKETTDKDKELCNVFTDMCFTIHKDVPKKKKIKRFIIA
YDGDVVDDVEDSDVTHIITETHITEAKATTIQVQPEWVWICVKAKKLFKI
DPFLLVTAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035767XLOC_035767Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056787TCONS_00056787Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR000977DNA_ligase_ATP-dep
IPR012309DNA_ligase_ATP-dep_C
IPR031916LIG3_BRCT
IPR012310DNA_ligase_ATP-dep_cent
IPR019406Znf_C2H2_APLF-like
IPR012308DNA_ligase_ATP-dep_N
IPR016059DNA_ligase_ATP-dep_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003909DNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0071897DNA biosynthetic process
GO:0051103DNA ligation involved in DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0051103 DNA ligation involved in DNA repair
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003909 DNA ligase activity
molecular_function GO:0003910 DNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 595..615
NoneNo IPR availableGENE3D3.30.1490.70coord: 283..346
e-value: 2.4E-18
score: 66.0
NoneNo IPR availableGENE3D2.40.50.140coord: 350..495
e-value: 1.9E-40
score: 138.1
NoneNo IPR availableGENE3D3.30.470.30coord: 168..282
e-value: 5.0E-32
score: 110.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..575
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..616
NoneNo IPR availableCDDcd07902Adenylation_DNA_ligase_IIIcoord: 130..342
e-value: 7.26909E-135
score: 397.863
NoneNo IPR availableCDDcd07967OBF_DNA_ligase_IIIcoord: 348..486
e-value: 1.74596E-90
score: 280.018
NoneNo IPR availableSUPERFAMILY56091DNA ligase/mRNA capping enzyme, catalytic domaincoord: 135..340
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 624..695
e-value: 9.6E-5
score: 31.8
IPR001357BRCT domainGENE3D3.40.50.10190coord: 611..700
e-value: 2.3E-13
score: 49.6
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 622..705
score: 14.23
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 623..705
IPR000977DNA ligase, ATP-dependentTIGRFAMTIGR00574TIGR00574coord: 12..492
e-value: 4.3E-140
score: 465.8
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 367..476
e-value: 2.5E-18
score: 66.4
IPR031916DNA ligase 3, BRCT domainPFAMPF16759LIG3_BRCTcoord: 623..696
e-value: 3.8E-18
score: 65.5
IPR012310DNA ligase, ATP-dependent, centralPFAMPF01068DNA_ligase_A_Mcoord: 145..339
e-value: 1.6E-59
score: 200.9
IPR012310DNA ligase, ATP-dependent, centralPROSITEPS50160DNA_LIGASE_A3coord: 245..379
score: 39.383
IPR019406Zinc finger, C2H2, APLF-likePFAMPF10283zf-CCHHcoord: 579..600
e-value: 6.3E-6
score: 26.1
IPR012308DNA ligase, ATP-dependent, N-terminalPFAMPF04675DNA_ligase_A_Ncoord: 12..95
e-value: 7.3E-15
score: 55.6
IPR012308DNA ligase, ATP-dependent, N-terminalGENE3D1.10.3260.10coord: 8..167
e-value: 8.1E-29
score: 100.5
IPR012308DNA ligase, ATP-dependent, N-terminalSUPERFAMILY117018ATP-dependent DNA ligase DNA-binding domaincoord: 25..159
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00333DNA_LIGASE_A2coord: 317..339
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00697DNA_LIGASE_A1coord: 168..176
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 350..493

Blast
[Close]
BLAST of TCONS_00056787-protein vs. Swiss-Prot (Human)
Match: DNLI3 (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2)

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 358/692 (51.73%), Postives = 462/692 (66.76%), Query Frame = 0 
Query:    7 LFQGVVSDTVMDFFSKSHTVKPLSKSNLTLIEVDEDLESLSKETKEDAQTAILKKISKKCTTDDLCYIVRLIKHDLRTNCGAKHFLDALDENAYEAWQASSDLKQVIEKWQANKDESSMIPGLKKTISIKATLMTPVKPMLAEACKSIEQAFKKCPNGMYSEIKYDGERVQIHKDGEKFQYFSRSLKPVQPHKIAEVKDFIPKACPQGESLILDGEVLLMDSNTNQPLPFGTLGIHKKAKFKDATVCYVIFDILQFNDENLMKRSVQERRKILQDNVTEIPGRIVHSEMKVVTKKQELQSMLKKCFAQNLEGLVLKDIKGKYEPGKRHWLKVKKDYLQKGAMADTADLVVLGAYIGTGNKGGLMSVFLMGCYDESRGIWVTVTKCGNGHDDDTLKKLQKQLKMQKISKDFSKVPMWLDVDRGLVPDYVIADPKNSQIWEITGAEFSQSSTHTADGISIRFPRVTRIRNDKDWKTATSLKRLKVLYKESKETTDVEMPSTSTNTTKAKTEKKSPKKIKEEDQTSPAKKEKKLKRKSEESTSTLKNEVEEDSSKKKKKKDDDDDNDGTTTKQKKACTFGEKCYRTKNGEHMKEYSHEKNEVE-NEKDQEMKETTDKDKELCNVFTDMCFTIHKDVPKKKKIKRFIIAYDGDVVDDVEDSDVTHIITETHITEAKATTIQVQPEWVWICVKAKKL 697
            L QG VS+T+  FF +S +  P +KS LT+ EVDE L  LSK TKED Q   L+ I+ +CT +DL  I+RLIKHDL+ N GAKH LDALD NAYEA++AS +L+ V+E+   N  E    PG ++ +S++A+LMTPV+PMLAEACKS+E A KKCPNGM+SEIKYDGERVQ+HK+G+ F YFSRSLKPV PHK+A  KD+IP+A P G S+ILD EVLL+D+ T +PLPFGTLG+HKKA F+DA VC  +FD + FND +LM R + ERRK L DN+ EIP RI+ SEMK VTK  +L  M+ +   + LEGLVLKD+KG YEPGKRHWLKVKKDYL +GAMADTADLVVLGA+ G G+KGG+MS+FLMGCYD     W TVTKC  GHDD TL +LQ +L M KISKD SK+P WL V++   PD+++ DPK + +WEITGAEFS+S  HTADGISIRFPR TRIR+DKDWK+AT+L +LK LY+ SKE  D         T  A  E  S      E+   P+      K  S+ S ST K E +  +S  K      D N    T +  A   GEK             + + + V+  EK +   ET  + K L ++FT +   +    P   +++R+ +A+DGD+V + + +  TH++       A     QV PEW+W C++ ++L
Sbjct:  345 LEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADF--------TVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSK------DGN--MQTAKPSAMKVGEK------------LATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQ---QVSPEWIWACIRKRRL 1005
The following BLAST results are available for this feature:
BLAST of TCONS_00056787-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI30.000e+051.73DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2[more]
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