TCONS_00056402-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056402-protein
Unique NameTCONS_00056402-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056402-protein ID=TCONS_00056402-protein|Name=TCONS_00056402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MMTKNILRKGKDTQNHLKYLRNAFAESCQNIDAFLEVDNALYTLVGYLTG
NNTTLQLEAVWCLTNITANENQNIETFVKATSAYLITFLKSGSVLLQDQS
AWALGNMAADSHNIREILKAQGIVKPLTELVESDVGEVVQSSLFAICNLC
KSLQSFVPLVFTPRFIKIIFKLLNCADTNIFIVGDIAWLLVHFSWNKSGC
NLLMEYDFINVLMKKVKLLSPGTQEYLYVVLPSLRVIGNVFGNQDDVNNL
QSDPSLFHDIVQTANTILLRFQAKEYVIKECLWMISNLFSCPMEDHLSNE
VVLRDVQKVVFNIMSNFKSSNRDIQKEAAVCFCNLSHQPLMQHFKDILTS
EDIVLNFMEFLRMDDLDLIWISLSYFDLLLNEDKMKVIFQKHNGLSYLDA
FQHHPNENIRSKSFQILQTFGTAHPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035546XLOC_035546Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056402TCONS_00056402Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 110..151
e-value: 4.1
score: 16.3
coord: 70..109
e-value: 14.0
score: 12.1
coord: 27..68
e-value: 3.3
score: 16.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 5..424
e-value: 7.4E-34
score: 116.5
NoneNo IPR availableCDDcd00020ARMcoord: 39..150
e-value: 3.68256E-17
score: 76.1991
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 15..420

Blast
[Close]
BLAST of TCONS_00056402-protein vs. Swiss-Prot (Human)
Match: IMA4 (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.159e-20
Identity = 90/383 (23.50%), Postives = 172/383 (44.91%), Query Frame = 0 
Query:   51 NNTTLQLEAVWCLTNITANENQNIETFVKATSAYL-ITFLKSGSVLLQDQSAWALGNMAADSHNIREILKAQGIVKPLTELVESDVG-EVVQSSLFAICNLCKSLQSFVPLVFTPRFIKIIFKLLNCADTNIFIVGDIAWLLVHFS-WNKSGCNLLMEYDFINVLMKKVKLLSPGTQEYLYVVLPSLRVIGNVFGNQDDVNNLQSDPSLFHDIVQTANTILLRFQAKEYVIKECLWMISNLFSCPMEDHLSNEVVLRDV--QKVVFNIMSNFKSSNRDIQKEAAVCFCNLSHQPLMQHFKD---ILTSEDIVLNFMEFLRMDDLDLIWISLSYFD--LLLNEDKMKV---IFQKHNGLSYLDAFQHHPNENIRSKSFQILQTF 420
            +N +LQ EA W LTNI +  +   +  V++ +  L +  L+S    + +Q+ WALGN+  D    R+ + + G+VKPL   +   +    +++  + I NLC++     P+      +  +  L+   D NI +  D  W L + +        ++++   +  L   V LLS    + + V   +LR +GN+    D+    Q+   L  D++     +L     KE + KE +W +SN+ +        N+  ++ V    ++  I+      +   QKEAA    NL+    +   KD    L  ++++  F   L + D  ++ + L      L++  D+      I ++  GL  ++  Q H NE+I   +F+I+  +
Sbjct:  127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILV--DTVWALSYLTDGGNEQIQMVIDSGVVPFL---VPLLS---HQEVKVQTAALRAVGNIVTGTDE----QTQVVLNCDVLSHFPNLL--SHPKEKINKEAVWFLSNITA-------GNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLT----ISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQY 484
The following BLAST results are available for this feature:
BLAST of TCONS_00056402-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMA42.159e-2023.50Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 ... [more]
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