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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00054796-protein ID=TCONS_00054796-protein|Name=TCONS_00054796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2543bp
MEXFGCDKVKLNGRKFGKKERWKILYKEFKVIETRDPSTFFNVLDVEESV
ETKKISVIKQDIVFPSLQNLQHFEWFSVSLVKKPRQYQIEAFIEVLQRNL
VVVLKTGSGKTLIASMFLARMCSLNPEKLGLMIVDRIPLVFQQGDAIHAD
TKLRVAKICGENKTTYKIQQINNMRFDVLVVTAGAFYEMVQRKMIDINLF
CAVVFDECHHLTGGHRYVDVLQLFTKQNVQYQPRILGLTASPVNGKTLIQ
CQNRLEEFLKSFPNVKIFSPRLPTSDQKVETITMKRTSAQNEFIVTVFDQ
FMKYCKCISDLVKIKDIEPLKMTLLNAHHVLGDLRGIDSEYGDKFRDLEQ
LVKEAKLLLETMVTADILGTEYGLKILESEDKFSWLCRGQHKEISNRFQK
LITTIRDMSKESKILIFVRTRSICTILTKRLQEEFPELHPDRVVGHGGYD
GMDWEFDQKGKLEKFSTGKCNVLVCTSVLEEGLDVATCDLVVCFTDVQSL
IKFIQAKGRARKQGSRFYIYNSQATLNTNSDLRLQEQMMLAVMRQKESSC
ALFSELSKEIMRKIQAEMEKDDQLSSLKEKQFSILGDGLDSDFSFVVYCD
PVKGINPNEIKTKLLEDLQECEEFVVNRLILLSEENKKVYSLPKRIFSEE
TCVFLVSVKCHSNSQPPDTYAAFCNVFPYSIQLDRSTILPVWSKAKFPVQ
PLAGNGQVTCTNLQMGYFTDKKTFIKKFHCDQIVDIKFQEKDIKFSYDDE
NSPGTAFFNPQKHAIIPLTSIENFVLLSSTPSSVSLAIPLKHPPFMKRDV
LNKEVRASIMNYDPIMMALADYSVLVLNFEFCDLYQLTNVLDNVCPVPYY
NVSLKIKDETNIESHVQDFSALPRLDDALWSLQCLKDSRSFCFPPSLQEQ
TVNVIMSKSDPQDKYLIDKVVQKSCSNQRLPFFYGFDRNLNETYNAFAAV
PKNRRHFLEDVVPKGHHLIKRAFITPLRVVHLPSVPVASNRLLRMLVDTK
YPLVIVTFRDEDSSKLQDSKILNRFEHIVENGVELNGKQYHFLCSTGSQL
REHKGYYVSTPTYQEILEIRKMIIPDPTQFTSVAKYFSRLGLYGTADKPI
CNINFTTNCQMIDDLKARDGNLFTDGAGKISHTMARRLMEKLPGDLKDIP
SAFQIRYSGFKGIVVATSDDDPQLNGKSFAFRPSMEKFRNKDESLCVCSY
SRLLNLSLNREIVTLLCSIPIEWGLNTTLLNYQEAAIARYSNMFNEQSIA
FNELRNFLTTRDVDEIQDSEMELIDEKYWISILQGIYRLRTREIRTRTNI
PLNIQTQGCLIMGVPDPYGVLEEDEVYVQLKEGKRINRVLEGPLLVFRNP
CLHPGDCPTLKAVNKKELKHLYNVIVFPVKGLQSIPATCSGGDLDGDLYA
VIWDPDLIPPAGSGHAACDYSDLAMPNEPLEPDNVTSQTTLARFFGKFMS
NDCLGRVATKHLSICDQLDDGARDPLTITLSKAQSQAVDFPKTGILPQWP
KQLLFEYKSFPDFMEKSLKESYQSKKILGDLYRRCRSLVYNFENANSTGR
PNVLLNMSLWVQGQEEYLEDAANVYVSYAYDMDMLMRKFELKVEADIILG
QATFGWSQHLEADKGKAANAVEATYKAIVEKYRVIFFSDVSTEDEKRMKA
SAWYRIVNDPEIKINKRKADAVLYLSFPWVITDILCEIRKAGERTNISRR
LVNIGETALQLFKKNSPQLCRTIIEKIKKAQHIEKSVNDFMKKVYKINKG
VFLIEPYGSTSMYLCETDSDIDVCILPKKLNKLLEIKSLFPRPDEFKKLS
PTEQQKFFLGNIISRAVDTVTSSKKDLLEAKVPIIKCTFQDGDKEILCDI
SMNEIGYRKTLYVHHLYEEDPIMLPVFWILVRWARLSGLIRSTISSDKRM
DSADFYALVIHILQLPEMVEMSISKTTRWSGIKYLNQQLDQVGIESLYEL
GKNIFEFFRIVSTLEADNMELRWPAPGIPRVYLDKSQVEDVKKLAAMAYH
ALSATRDVNTLLNYFLVTSKKNTSIRKTLPLNVSYAIGKARSFHAARLSE
ISGALVTLEVKDGKDNFELRAEGSRMSIENLLNEMKTLVTNNKALVLGRL
PMKSSRYFMEGSSIFLVRLNTDLSAVLKFENSFGAFELHHNAHQRSAVHV
TQTNCEGEDWGEDCVERLTNHLLQQFQKFPTGEGPRATDLLNGLEVTVRF
GCFYLVDIGAHLPDSQTSIQIQELQFSVEKGRRSRKAWSRGEFRANDNLF
AQPKVNTPTPSFRMVDIRPGGARDVEEGASQRIKRNVAKNKRSKRGIAAA
FTPGVLKSNTTDESARRTALECYRQLVNQCGFRSGQCTRRSPPPFWRVSV
NPSTSYEAQINYDHDFNVIKVTERPLNWVHGTILDGRKQEFTGKLRSNPD
VRLLMSTEEKIKEGSDLYRSVFPGHENPVIIRNGKPSVPQFVLSGTQKMK
KNFVSMVRNVQHTELYTNGTCDACIVYGTIYFGKELTITRPFCELSLYFD
TQPLRDCIKGDLNNETLENYVRTLFKTSNELKEKLDLLISNPS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003968 | RNA-directed 5'-3' RNA polymerase activity |
| GO:0016787 | hydrolase activity |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0003968 |
RNA-directed 5'-3' RNA polymerase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 429..513
e-value: 5.9E-7
score: 39.1 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 399..511
e-value: 5.5E-13
score: 49.2 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 397..585
score: 13.516 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 80..268
e-value: 8.0E-20
score: 81.9 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 91..260
score: 16.69 |
| IPR007855 | RNA-dependent RNA polymerase, eukaryotic-type | PFAM | PF05183 | RdRP | coord: 974..1534
e-value: 1.4E-121
score: 406.9 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 28..297
e-value: 1.7E-23
score: 82.5 |
| None | No IPR available | GENE3D | 3.30.460.10 | | coord: 1708..1904
e-value: 1.2E-10
score: 40.7 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 389..584
e-value: 3.4E-21
score: 75.1 |
| None | No IPR available | CDD | cd00079 | HELICc | coord: 395..510
e-value: 2.09312E-11
score: 63.0256 |
| None | No IPR available | CDD | cd00046 | DEXDc | coord: 98..242
e-value: 5.05999E-14
score: 71.2144 |
| None | No IPR available | SUPERFAMILY | 81301 | Nucleotidyltransferase | coord: 1725..1865 |
| IPR006935 | Helicase/UvrB, N-terminal | PFAM | PF04851 | ResIII | coord: 83..242
e-value: 1.2E-14
score: 54.6 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 98..245
coord: 380..516 |
Blast
The following BLAST results are available for this feature:
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