TCONS_00053949-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053949-protein
Unique NameTCONS_00053949-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053949-protein ID=TCONS_00053949-protein|Name=TCONS_00053949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp
QEPRDRHLRHLSFHACKFGTSARSIILTSSSFNSSSLSSEEFSTYSSFWY
SPSQRTHSDYNSDTMENKRIKNEAALSKVLHIRQIAHDATESDLRVLGTP
FGTVKNVLHMRSKNQAFLEMDSIDSAKTLINYYQYTTPTIRNMPVFIQFS
QHQELRTNQQQPKEESANGVDSYEANGCVLKVIVTNIMYPVNIDVLKEVF
QRCGELQKMVTFIRNDQFHALIQYANPKEASAAKTLFDRQNIYNGCNTLH
VEFSKMTELTVKYNNEKMRDFTKPDVAIAQMGAMQPQMNPGMLPVPASFP
PQMFQQNLGFTGNFPHHMMGNLSPNSQISYQPHMVSHNMGNQRQGSVLLV
SHLNEEKINCDDLFILFGHYGDVLRVKILFNKKNTALIQFTDASQSTTAL
QNLNNVTLYEQEMRVSRSKHDNVNMPKAEDEGKELTKEYVNSPLHRFKKP
GSKNFKNIFPPICTLHLSNIPESVSEEEIKEMFTEYGGTINNFRFFPKDR
RMALIQLSTIEEALVCLIKLHNKKLNESSHLRVSFAKDEMSQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034058XLOC_034058Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053949TCONS_00053949Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR006536HnRNP-L/PTB
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 464..534
e-value: 6.1E-10
score: 49.0
coord: 79..148
e-value: 9.4E-6
score: 35.1
coord: 181..252
e-value: 5.1E-4
score: 29.4
coord: 347..416
e-value: 1.2E-9
score: 48.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 467..527
e-value: 3.1E-7
score: 30.0
coord: 82..131
e-value: 6.4E-5
score: 22.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 78..152
score: 9.456
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 463..538
score: 12.219
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 346..420
score: 13.157
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 338..428
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 179..269
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 74..161
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 450..538
NoneNo IPR availablePFAMPF13893RRM_5coord: 336..442
e-value: 2.4E-30
score: 104.6
coord: 168..261
e-value: 0.012
score: 15.1
NoneNo IPR availableGENE3D3.30.70.330coord: 60..167
e-value: 1.4E-13
score: 50.4
NoneNo IPR availableGENE3D3.30.70.330coord: 168..270
e-value: 5.1E-9
score: 35.5
coord: 431..543
e-value: 2.0E-14
score: 53.1
coord: 324..430
e-value: 5.1E-13
score: 48.5
NoneNo IPR availableCDDcd12425RRM4_PTBP1_likecoord: 464..537
e-value: 1.20943E-37
score: 132.4
IPR006536HnRNP-L/PTBTIGRFAMTIGR01649TIGR01649coord: 77..538
e-value: 9.8E-146
score: 484.5

Blast
[Close]
BLAST of TCONS_00053949-protein vs. Swiss-Prot (Human)
Match: PTBP1 (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 1.367e-140
Identity = 230/535 (42.99%), Postives = 320/535 (59.81%), Query Frame = 0 
Query:   38 SSEEFSTYSS---FWYSPSQRTHSDYNSDTMENKRIKNEAALSKVLHIRQIAHDATESDLRVLGTPFGTVKNVLHMRSKNQAFLEMDSIDSAKTLINYYQYTTPTIRNMPVFIQFSQHQELRTNQQ------QPKEESANGVDS-----------------YEANGCVLKVIVTNIMYPVNIDVLKEVFQRCGELQKMVTFIRNDQFHALIQYANPKEASAAKTLFDRQNIYNGCNTLHVEFSKMTELTVKYNNEKMRDFTKPDVAIAQMGAMQPQMNPGM-----LPVPASFPPQMFQQNLGFTGNFPHHMMGNLSPNSQISYQPHMVSHNMGNQRQG-SVLLVSHLNEEKINCDDLFILFGHYGDVLRVKILFNKKNTALIQFTDASQSTTALQNLNNVTLYEQEMRVSRSKHDNVNMPKAEDEGKELTKEYVNSPLHRFKKPGSKNFKNIFPPICTLHLSNIPESVSEEEIKEMFTEYGGTINNFRFFPKDRRMALIQLSTIEEALVCLIKLHNKKLNESSHLRVSFAKDEM 540
            S E FST  +   F  S +  + ++ N         ++    S+V+HIR++  D TE ++  LG PFG V N+L ++ KNQAF+EM++ ++A T++NYY   TP +R  P++IQFS H+EL+T+        Q   ++ N V S                       VL++IV N+ YPV +DVL ++F + G + K++TF +N+QF AL+QYA+P  A  AK   D QNIYN C TL ++FSK+T L VKYNN+K RD+T+PD+     G  QP ++  M     L VP                N    +     P++  +          G    G SVLLVS+LN E++    LFILFG YGDV RVKILFNKK  AL+Q  D +Q+  A+ +LN   L+ + +R++ SKH NV +P+   E + LTK+Y NSPLHRFKKPGSKNF+NIFPP  TLHLSNIP SVSEE++K +F+  GG +  F+FF KDR+MALIQ+ ++EEA+  LI LHN  L E+ HLRVSF+K  +
Sbjct:   16 SDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP---SGDSQPSLDQTMAAAFGLSVP----------------NVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531
The following BLAST results are available for this feature:
BLAST of TCONS_00053949-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTBP11.367e-14042.99Polypyrimidine tract-binding protein 1 OS=Homo sap... [more]
back to top