TCONS_00053595-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053595-protein
Unique Name	TCONS_00053595-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	542

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053595-protein ID=TCONS_00053595-protein|Name=TCONS_00053595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp
MEIPHAVLAGGWIPFTVVLVLTFIFSWVYIRLFQHHDSSKVASTLGSIIG
LFITLLTIALVPVDVFLVSYMKNPDGSFKDWVNDNSTRNSIESTVTYAYY
TLYGLVGLFVFLVLPFMYFFFEDPEEDELSTKQKCCTSLKYTVVFLIIAF
VILMTGAFVPLKTPSSQNITGIDDKIDFLKDQLHQYTHADQAMSIMVGVM
SMFGMFTLILYTGYGMSALPLGMIRCCRKYEETESNPRRVTKKERDADKL
NALRTKSNSGRNLSRYERNELRRLEQDERIQHRIDRKKSRVKNNCLGKAQ
RILKPFEVVFGFAFLAISLLMMVSLTITNVDKELNSLGYKQGYSLPVPKL
QNPVNIIMVYASKVFPLDYVLFSGMALFFIFASMNGLKRMGIWCCCIRLF
KIRTGRTMPQALLFMVFIMMFMVLGVTIVLFNITPQYVQYGNQMYQHHTT
STNGTISTDVKKCTTDAPKGNCTMSSLALLLNTLFYKAWFFGAFYHWSIW
FLLLVYYMAFLYNSFSIFRTRSEAEMIDSDDDESDEERLITA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033819	XLOC_033819	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053595	TCONS_00053595	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006876	LMBR1-like_membr_prot

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006876	LMBR1-like membrane protein	PFAM	PF04791	LMBR1	coord: 13..277 e-value: 5.2E-26 score: 91.5
None	No IPR available	GENE3D	1.10.287.70		coord: 79..451 e-value: 1.9E-4 score: 20.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..267

Blast

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BLAST of TCONS_00053595-protein vs. Swiss-Prot (Human)
Match: LMBD1 (Probable lysosomal cobalamin transporter OS=Homo sapiens GN=LMBRD1 PE=1 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.046e-112
Identity = 199/514 (38.72%), Postives = 314/514 (61.09%), Query Frame = 0

Query:    6 AVLAGGWIPFTVVLVLTFIFSWVYIRLFQHHDSSKVASTLGSIIGLFITLLTIALVPVDVFLVSYMKNPDGSFKDWVNDNSTRNSIESTVTYAYYTLYGLVGLFVFLVLPFMYFFFEDPEEDELSTKQKCCTSLKYTVVFLIIAFVILMTGAFVPLKTPSSQNITGIDDKIDFLKDQLHQYTHADQAMSIMVGVMSMFGMFTLILYTGYGMSALPLGMIRCCRK--YEETESNPRRVTKKERDADKLNALRTKSNSGRNLSRYERNELRRLEQDERIQHRIDRKKSRVKNNCLGKAQRILKPFEVVFGFAFLAISLLMMVSLTITNVDKELNSLGYKQGYSLPVPKLQNPVNIIMVYASKVFPLDYVLFSGMALFFIFASMNGLKRMGIWCCCIRLFKIRTGRTMPQALLFMVFIMMFMVLGVTIVLFNITPQYVQYGNQMYQHHTTST------NGTISTDVKKCTTDAPKGNCTMSSLALLLNTLFYKAWFFGAFYHWSIWFLLLVYYMAFL 511
            A L  GW  F ++L+    F W+Y+R +Q    S+V ST+ +I  L I L+T AL+PVD+FLVSYMKN +G+FKDW N N +R  IE TV Y YYTLY ++   VF  +PF+YF++E+ ++D+ S   +  T+LKYT+ F++I  ++L+ GAFVPL  P+++N T  + K+  L ++L   +H   A+S  +  +++ GM   I YT YGMSALPL +I+  R   YE  E N   + + E+    +  +++KS  GR L   ++  L++ E+  R   + +R    ++N+   K    L+P ++V+G  F+ ++LL ++SL ++N+DK L+S G   G+ +    L NP+N+++     VFPLDY+L + + ++FIF SM G++ +GIW   IRL+KIR GRT PQALLF+  I++ +VL  + +++++ PQYV YG+Q Y   T  T      N T+S   K+C  DAP+  CT++   L L    +K WFF A Y++  W  L V+ +  +
Sbjct:    9 AELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFLVSYMKNQNGTFKDWANANVSRQ-IEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWE-KVKSLFEELGS-SHGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSAAYERLE-NTEDIEEVEQ---HIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRERHLEFIENSWWTKFCGALRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLNMLLPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVP-KRCDADAPEDQCTVTRTYLFL----HKFWFFSAAYYFGNWAFLGVFLIGLI 510

The following BLAST results are available for this feature:

BLAST of TCONS_00053595-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053595-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LMBD1	1.046e-112	38.72	Probable lysosomal cobalamin transporter OS=Homo s...	[more]

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TCONS_00053595-protein (polypeptide) - C. hemisphaerica