TCONS_00053299-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053299-protein
Unique NameTCONS_00053299-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053299-protein ID=TCONS_00053299-protein|Name=TCONS_00053299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MNVAGRRIFSGIQPTGVPHIGNYLGAIRNWVNLQNNASRNDLIIFCVVDQ
HSCTTHQDPVQLKENVTNMVAFLLACGINPNKSLLFQQSKVPHHTSLSWY
LSCLAPIGQLKRMHQWKSKSGNEKENSNLGLFSYPVLMAADILLYKSTHV
PVGHDQLQHIELTRDLTNLFNKRYNNDVFPLPESILTDTARIMSLRKPQE
KMSKSDKMVNSRIDLTDSDDTIALKIRKAVTDSNSFLTHGLNERHGVRNL
IDILSALTDTDKSTLIERYGGIEYFTRNLKSDTTDALIEHLKPIRNRYED
IISDRAYLNDILRNGSEKAKEIAEETMSDVHKVLGMSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033642XLOC_033642Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053299TCONS_00053299Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002306Trp-tRNA-ligase
IPR002305aa-tRNA-synth_Ic
IPR014729Rossmann-like_a/b/a_fold
IPR001412aa-tRNA-synth_I_CS
IPR024109Trp-tRNA-ligase_bac-type
Vocabulary: Molecular Function
TermDefinition
GO:0004830tryptophan-tRNA ligase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006436tryptophanyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006436 tryptophanyl-tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004830 tryptophan-tRNA ligase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002306Tryptophan-tRNA ligasePRINTSPR01039TRNASYNTHTRPcoord: 201..211
score: 48.9
coord: 148..169
score: 49.22
coord: 72..91
score: 42.76
coord: 18..34
score: 42.39
IPR002306Tryptophan-tRNA ligaseTIGRFAMTIGR00233TIGR00233coord: 6..336
e-value: 6.7E-97
score: 322.6
IPR002306Tryptophan-tRNA ligaseCDDcd00806TrpRS_corecoord: 7..290
e-value: 1.02883E-116
score: 340.715
IPR002305Aminoacyl-tRNA synthetase, class IcPFAMPF00579tRNA-synt_1bcoord: 7..292
e-value: 3.1E-73
score: 246.5
NoneNo IPR availableGENE3D1.10.240.10coord: 197..319
e-value: 9.3E-29
score: 100.0
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 7..336
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 1..196
e-value: 9.7E-72
score: 240.9
IPR001412Aminoacyl-tRNA synthetase, class I, conserved sitePROSITEPS00178AA_TRNA_LIGASE_Icoord: 14..23
IPR024109Tryptophan-tRNA ligase, bacterial-typeHAMAPMF_00140_BTrp_tRNA_synth_Bcoord: 5..337
score: 36.891

Blast
[Close]
BLAST of TCONS_00053299-protein vs. Swiss-Prot (Human)
Match: SYWM (Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens GN=WARS2 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.540e-109
Identity = 158/331 (47.73%), Postives = 219/331 (66.16%), Query Frame = 0 
Query:    6 RRIFSGIQPTGVPHIGNYLGAIRNWVNLQNNASRNDLIIFCVVDQHSCTTHQDPVQLKENVTNMVAFLLACGINPNKSLLFQQSKVPHHTSLSWYLSCLAPIGQLKRMHQWKSKSGNEKENSNLGLFSYPVLMAADILLYKSTHVPVGHDQLQHIELTRDLTNLFNKRYNNDVFPLPESILTDTARIMSLRKPQEKMSKSDKMVNSRIDLTDSDDTIALKIRKAVTDSNSFLTHGLNERHGVRNLIDILSALTDTDKSTLIERYGGIEYFTRNLKSDTTDALIEHLKPIRNRYEDIISDRAYLNDILRNGSEKAKEIAEETMSDVHKVLGM 336
            +R+FSGIQPTG+ H+GNYLGAI +WV LQ+     D +++ +VD HS T  QDP  L++++ +M A LLACGINP KS+LFQQS+V  HT LSW LSC+  + +L+ +HQWK+K+  +K +  +GL +YPVL AADILLYKSTHVPVG DQ+QH+EL +DL   FNK+Y  + FP+PESILT   ++ SLR P  KMSKSD    + + +TDS + I  K RKAVTD  S +T+    R GV N++ + +A+T      ++ R  G+   T   K    DA+IE   PI+   E +  D+ +L  +L+ GS KAKE+A     +V K++G 
Sbjct:   35 KRVFSGIQPTGILHLGNYLGAIESWVRLQDE---YDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEHTQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKY-GEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMN--TARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKELAYTVCQEVKKLVGF 359
The following BLAST results are available for this feature:
BLAST of TCONS_00053299-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYWM1.540e-10947.73Tryptophan--tRNA ligase, mitochondrial OS=Homo sap... [more]
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