TCONS_00048549-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048549-protein
Unique NameTCONS_00048549-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048549-protein ID=TCONS_00048549-protein|Name=TCONS_00048549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp
MSISIGGAVSSFNKRNMSAPSLFPQDPRSALSRECLERIARVNNTTAASS
NTSPSHRVKFAAQAQNDNSNIITINVSGRRYQTYLTTLQRFPSSLLGDPM
KRKNFYNQENKEYFFDRNRKAFSGVLHYYQTHGDEIECPTGVSEKTFAQE
LLFFELFDQKTNDVDSIMSSTEFLVPKNVTLAKIWILFEKPNSSPSARIL
AVFSISIILLSITVFCLETVPALNPDHQEGKHMSSTWYLLNVVCNAWFTL
EFVIRFVAAPNKLDFMKSAVNLIDLISILPFYISELIGHASDNSLAVLRV
IRVIRVIRIFKLTRHSRGLHILANTIKASFQELIMLVLFLAIAIILFASA
VYFAESAGGHPDNKFRSIPHSFWWAVITMTTVGYGDLTPKTLIGQMVGTL
CAISGVLVIALPVPVIVGNFERYYKLERSRHARETEVIRKEKEEETFADM
RRSIQMMTHTSIILAGGVKRHCPNGTEQQQNNTPNNDNNNNDKKSNLIYP
HSPNKRKTFKERIQDKLAFTFQRPYSDIEQYSDGCVTTPDDEYRHSLVGV
VDDSGDINRLKSNGNVSMRTLPDINIDSPPSSTHPSEYTPETLESRPSSA
LGYSEGFSTGNRITKANKGEAIWFGAGGQNEGPSKESSI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030867XLOC_030867Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048549TCONS_00048549Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR003972K_chnl_volt-dep_Kv1
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 405..416
score: 85.9
coord: 308..316
score: 80.74
coord: 112..122
score: 68.79
coord: 332..346
score: 47.94
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 332..355
score: 54.12
coord: 365..387
score: 72.43
coord: 265..285
score: 43.15
coord: 112..131
score: 57.22
coord: 303..329
score: 57.85
coord: 394..420
score: 67.74
coord: 191..219
score: 46.5
coord: 239..262
score: 43.08
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 113..123
score: 71.18
coord: 211..222
score: 67.07
coord: 188..204
score: 55.52
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 70..171
e-value: 4.1E-4
score: 29.7
NoneNo IPR availableGENE3D1.20.5.110coord: 386..420
e-value: 7.5E-10
score: 37.8
NoneNo IPR availableGENE3D3.30.710.10coord: 69..168
e-value: 4.0E-19
score: 68.1
NoneNo IPR availableGENE3D1.20.120.350coord: 196..331
e-value: 3.0E-33
score: 113.9
NoneNo IPR availableGENE3D1.10.287.70coord: 332..384
e-value: 6.7E-20
score: 70.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..505
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 571..611
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 193..423
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 72..159
e-value: 9.2E-23
score: 80.3
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 198..425
e-value: 8.9E-48
score: 162.6
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 69..161

Blast
[Close]
BLAST of TCONS_00048549-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 9.400e-111
Identity = 174/414 (42.03%), Postives = 260/414 (62.80%), Query Frame = 0 
Query:   44 NTTAASSNTSPSHRVKFAAQAQNDNSNI---ITINVSGRRYQTYLTTLQRFPSSLLGDPMKRKNFYNQENKEYFFDRNRKAFSGVLHYYQTHGDEIECPTGVSEKTFAQELLFFELFDQ---KTNDVDSIMSSTEFLVPKNVTLAKIWILFEKPNSSPSARILAVFSISIILLSITVFCLETVPALNPDHQ---------------EGKHMSSTWYLLNVVCNAWFTLEFVIRFVAAPNKLDFMKSAVNLIDLISILPFYIS---ELIGHASDN------SLAVLRVIRVIRVIRIFKLTRHSRGLHILANTIKASFQELIMLVLFLAIAIILFASAVYFAESAGGHPDNKFRSIPHSFWWAVITMTTVGYGDLTPKTLIGQMVGTLCAISGVLVIALPVPVIVGNFERYYKLE 427
            N   AS+         +  QA +D+      + IN+SG R++T L TL +FP++LLG+P KR  +++    EYFFDRNR +F  +L+YYQ+ G  +  P  V    F++E+ F+EL ++   K  + +  +   E  +P+     ++W+LFE P SS  AR++A+ S+ +IL+SI +FCLET+P L  D                      +  ++++  +C  WF+ E V+RF A P+K DF K+ +N ID+++I+P++I+   E+     +       SLA+LRVIR++RV RIFKL+RHS+GL IL  T+KAS +EL +L+ FL I +ILF+SAVYFAE+     ++ F SIP +FWWAV++MTTVGYGD+ P T+ G++VG+LCAI+GVL IALPVPVIV NF  +Y  E
Sbjct:    8 NVDEASAAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQS-GGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAE--EAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 418
The following BLAST results are available for this feature:
BLAST of TCONS_00048549-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA19.400e-11142.03Potassium voltage-gated channel subfamily A member... [more]
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