TCONS_00047330-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047330-protein
Unique NameTCONS_00047330-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047330-protein ID=TCONS_00047330-protein|Name=TCONS_00047330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MAKVRNKNFLTEEEKDLFDGLTADEIAEFNQDLDEKDEDLLPAGLRGEDQ
TTKDPTGPFDREKLMTYLKDEAVSQPDLQDPHYVPFEKKTRGRVFKKKEK
SKTTTPLLPDDLSDVLDAASEDDLLELAAVLGIHGMLTQKQSETADEDKT
WDSLKGSGLRKYKGGITKATKVKEYTDNEAVNELDMEEALAKLKAGDETL
EELNLNNHQEVTEDILMDIVEHLKNNTSLKKLHLANTQMKDHIGEELAEA
LKSNTTLEILNLESNFLKAESVMALLKVIEVNESLKELKLANQYNKIGHK
AEQAMAKSLAKNTTILRFGYNFDSRGPRHTCNKYVMRNNDIDRQKRQEAK
RQNGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030153XLOC_030153Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047330TCONS_00047330Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004934TMOD
Vocabulary: Molecular Function
TermDefinition
GO:0005523tropomyosin binding
Vocabulary: Biological Process
TermDefinition
GO:0051694pointed-end actin filament capping
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051694 pointed-end actin filament capping
molecular_function GO:0005523 tropomyosin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 186..206
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 254..281
e-value: 0.039
score: 23.1
coord: 226..253
e-value: 0.71
score: 18.2
coord: 282..311
e-value: 11.0
score: 9.7
NoneNo IPR availableGENE3D3.40.50.10480coord: 150..240
e-value: 3.6E-5
score: 22.9
NoneNo IPR availableGENE3D3.40.50.2000coord: 241..354
e-value: 1.6E-15
score: 56.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..60
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 186..347
IPR004934TropomodulinPFAMPF03250Tropomodulincoord: 7..139
e-value: 1.4E-33
score: 115.8

Blast
[Close]
BLAST of TCONS_00047330-protein vs. Swiss-Prot (Human)
Match: TMOD2 (Tropomodulin-2 OS=Homo sapiens GN=TMOD2 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.844e-65
Identity = 129/346 (37.28%), Postives = 205/346 (59.25%), Query Frame = 0 
Query:   13 EEKDLFDGLTADEIAEFNQDLDEKDED--LLPAGLRGEDQTTKDPTGPFDREKLMTYLKDEAVSQPDLQDPHYVPFEKKTRGRVFKKKEKSKTTTP----LLPDDLSDVLDAASEDDLLELAAVLGIHGMLTQKQSETADEDKTWDSLKGSGLRKYKGGITKATKVKEYTDNEAVNELDMEEALAKLKAGDETLEELNLNNHQEVTEDILMDIVEHLKNNTSLKKLHLANTQMKDHIGEELAEALKSNTTLEILNLESNFLKAESVMALLKVIEVNESLKELKLANQYNKIGHKAEQAMAKSLAKNTTILRFGYNFDSRGPRHTCNKYVMRNNDIDRQKRQEAKRQ 352
            +E +L   L+ +E+ +    LD+ D +  +LPAG R +DQT K  TGPFDRE L+ YL+ EA+ Q D +D  +VPF  + +GRVF  KEK   T       L  +L + L +AS+ +L +LAAVLG+H +L   + +    ++T ++  G G  +    + K  KVK   + E  N  ++E +L ++KA D +L+E+NLNN + +    L +  + L+ NT +KK  LA T+  D +    A+ LK N TL  LN+ESNF+    ++AL++ ++ N++L E+K+ NQ  ++G   E  +A+ L +N+ IL+FGY F  +GPR      + +NND+ R+KR EA R+
Sbjct:   16 DEDELLGKLSEEELKQLENVLDDLDPESAMLPAGFRQKDQTQKAATGPFDREHLLMYLEKEALEQKDRED--FVPFTGEKKGRVFIPKEKPIETRKEEKVTLDPELEEALASASDTELYDLAAVLGVHNLLNNPKFD----EETANNKGGKGPVR---NVVKGEKVKPVFE-EPPNPTNVEISLQQMKANDPSLQEVNLNNIKNIPIPTLREFAKALETNTHVKKFSLAATRSNDPVAIAFADMLKVNKTLTSLNIESNFITGTGILALVEALKENDTLTEIKIDNQRQQLGTAVEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNNDLVRKKRVEADRR 351
The following BLAST results are available for this feature:
BLAST of TCONS_00047330-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMOD21.844e-6537.28Tropomodulin-2 OS=Homo sapiens GN=TMOD2 PE=1 SV=1[more]
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