TCONS_00046593-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046593-protein
Unique NameTCONS_00046593-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046593-protein ID=TCONS_00046593-protein|Name=TCONS_00046593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MESSLPVFIDIPEKEQANEIRQYLISAGADLTSTSKENILEEVSCLLDAC
DNWLKSAADADLEALMNSFIYLILFCSFDEKLTRKFCTKVTDVGASQSNA
LLRINILKNLFTALPATSGLRFDTYLGQVNLASKFGLTDDIETQLKVVDD
WLNKWNVIIENRRTCYRDLHGALKDQQKSEEATRVILKLLSTYDESSATQ
AKEDAEKCVLDFIGKQDVFIMDHLLKLKPVEILAGQPIHKLLEILVSGQL
SDYKEFYNANKEFVDKSGLVHDHIIEKMRILTMLSLAINNKEISFAQIKE
SLHLDEDDIEDFVIDFVKSGLAHAKIDQINEKIVIRSTSRRTFGKGEWEE
LQDRLQIWLDNLSLIKTSMEQVVKHGHGG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029737XLOC_029737Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046593TCONS_00046593Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
IPR027528eIF3m
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 269..358
e-value: 1.1E-14
score: 64.8
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 237..336
e-value: 3.0E-12
score: 46.9
NoneNo IPR availableSMARTSM00753PINTcoord: 269..358
e-value: 1.1E-14
score: 64.8
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 269..343
e-value: 9.7E-7
score: 28.3
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 272..339
IPR027528Eukaryotic translation initiation factor 3 subunit MHAMAPMF_03012eIF3mcoord: 3..375
score: 21.804

Blast
[Close]
BLAST of TCONS_00046593-protein vs. Swiss-Prot (Human)
Match: EIF3M (Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.313e-92
Identity = 144/369 (39.02%), Postives = 231/369 (62.60%), Query Frame = 0 
Query:    4 SLPVFIDIPEKEQANEIRQYLISAGADLTSTSKENILE-EVSCLLDACDNWLKSAADADLEALMNSFIYLILFCSFD--EKLTRKFCTKVTDVGASQSNALLRINILKNLFTALPATSGLRFDTYLGQVNLASKFGLTDDIETQLKVVDDWLNKWNVIIENRRTCYRDLHGALKDQQKSEEATRVILKLLSTYDESSATQAKEDAEKCVLDFIGKQDVFIMDHLLKLKPVEILAGQPIHKLLEILVSGQLSDYKEFYNANKEFVDKSGLVHDHIIEKMRILTMLSLAINNKEISFAQIKESLHLDEDDIEDFVIDFVKSGLAHAKIDQINEKIVIRSTSRRTFGKGEWEELQDRLQIWLDNLSLIKTSM 369
            S+P FIDI E++QA E+R YL S GA+++  + E  L  +++ +++ACD  LK   D D+E++MNS + L+L    D  E L    C K+      +  +L R+ +L NLF  +   + +R+  Y   + +A+  G    I T+L  V  W++ WN+  E + T  R L+ AL D +KS+ A++V+++LL +Y E +A+QA+ DA +C++  +   + F+ DHLL LKPV+ L G+ IH LL I VS +L+ Y +FY  NK+F+D  GL+H+  + KMR+LT + +A+ NKEISF  +++ L +  DD+E FVID V++ + + KIDQ   K+V+  ++ RTFGK +W++L D L  W  NL+ +K S+
Sbjct:    2 SVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKED-DKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSL-RLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSL 368
The following BLAST results are available for this feature:
BLAST of TCONS_00046593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3M3.313e-9239.02Eukaryotic translation initiation factor 3 subunit... [more]
back to top